* using log directory 'd:/Rcompile/CRANpkg/local/3.1/FAiR.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'FAiR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'FAiR' version '0.4-15' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'FAiR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' calls in package code: 'Rgraphviz' 'corpcor' 'energy' 'mvnmle' 'mvnormtest' 'nFactors' 'polycor' Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Calls with DUP != TRUE: .C(FAiR_QD_sum, sum = numeric(1), x = x, middle = middle, length = length(x), DUP = FALSE, NAOK = TRUE) .C(FAiR_QD_grad, grad = numeric(length_x), x = x, middle = middle, length = length_x, holder = numeric(length_x), DUP = FALSE, NAOK = TRUE) .C("exhaustive_mve", number = as.integer(0), combos = combos, lengthcombos = length(combos), Xdata = as.double(X), Xrow = nrow(X), Xcol = ncol(X), DUP = FALSE, PACKAGE = "FAiR") DUP = FALSE is deprecated and will be disabled in future versions of R. * checking R code for possible problems ... NOTE FAiR_ADF: no visible global function definition for 'Matrix' FAiR_ADF_robust: no visible global function definition for 'CovMcd' FAiR_ADF_unbiased: no visible global function definition for 'CovMcd' FAiR_ADF_unbiased: no visible global function definition for 'huberM' FAiR_DAG: no visible global function definition for 'nodes' FAiR_DAG: no visible global function definition for 'addEdge' FAiR_DAG: no visible global function definition for 'subGraph' FAiR_Mcd: no visible global function definition for 'CovMcd' FAiR_blockanator: no visible global function definition for 'gmessage' FAiR_bootstrap2dppMatrix: no visible global function definition for 'Matrix' FAiR_bounds_coef: no visible global function definition for 'gmessage' FAiR_bounds_cormat: no visible global function definition for 'gmessage' FAiR_cor.rank: no visible global function definition for 'Diagonal' FAiR_cov.shrink: no visible global function definition for 'cov.shrink' FAiR_cov.shrink: no visible global function definition for 'Diagonal' FAiR_edit: no visible global function definition for 'ggroup' FAiR_edit: no visible global function definition for 'glabel' FAiR_edit: no visible global function definition for 'gdf' FAiR_edit: no visible global function definition for 'gbasicdialog' FAiR_edit: no visible global function definition for 'guiToolkit' FAiR_equality_restrictions: no visible global function definition for 'gmessage' FAiR_get_answer: no visible global function definition for 'ggroup' FAiR_get_answer: no visible global function definition for 'glabel' FAiR_get_answer: no visible global function definition for 'gseparator' FAiR_get_answer: no visible global function definition for 'gradio' FAiR_get_answer: no visible global function definition for 'gslider' FAiR_get_answer: no visible global function definition for 'gcheckboxgroup' FAiR_get_answer: no visible global function definition for 'gbasicdialog' FAiR_get_answer: no visible global function definition for 'guiToolkit' FAiR_get_mapping_rule_args: no visible global function definition for 'gmessage' FAiR_hetcor: no visible global function definition for 'hetcor' FAiR_hetcor: no visible global function definition for 'Diagonal' FAiR_indicators_FC: no visible global function definition for 'gmessage' FAiR_make_manifest_list: no visible global function definition for 'Diagonal' FAiR_make_target: no visible global function definition for 'gmessage' FAiR_mlest: no visible global function definition for 'mlest' FAiR_order_FC: no visible global function definition for 'gmessage' FAiR_peg_coefficients: no visible global function definition for 'gmessage' FAiR_quick_Rotate: no visible global function definition for 'targetT' FAiR_quick_Rotate: no visible global function definition for 'GPForth' FAiR_quick_Rotate: no visible global function definition for 'targetQ' FAiR_quick_Rotate: no visible global function definition for 'GPFoblq' create_FAobject,restrictions.independent-manifest.basic : .local: no visible binding for global variable 'factors' create_start,restrictions.1storder-manifest.basic : .local: no visible global function definition for 'GPForth' create_start,restrictions.2ndorder-manifest.basic : .local: no visible global function definition for 'GPForth' create_start,restrictions.general-manifest.basic : .local: no visible global function definition for 'GPForth' make_manifest,formula-data.frame-missing : .local: no visible binding for global variable 'Z' make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing : .local: no visible binding for global variable 'manfiest' make_restrictions,manifest.basic-parameter.scale-missing-missing-missing-missing : .local: no visible binding for global variable 'criteria' plot,FA-missing : .local: no visible global function definition for 'addEdge' plot,FA-missing : .local: no visible binding for global variable 'toDot' plot,FA.2ndorder-missing : .local: no visible global function definition for 'addEdge' plot,FA.2ndorder-missing : .local: no visible global function definition for 'join' plot,FA.2ndorder-missing : .local: no visible binding for global variable 'toDot' plot,FA.general-missing : .local: no visible global function definition for 'join' plot,FA.general-missing : .local: no visible binding for global variable 'toDot' profile,FA.general : .local: no visible binding for global variable 'p' screeplot,FA: no visible global function definition for 'parallel' screeplot,FA: no visible global function definition for 'nScree' screeplot,FA: no visible global function definition for 'plotnScree' screeplot,manifest.basic: no visible global function definition for 'parallel' screeplot,manifest.basic: no visible global function definition for 'nScree' screeplot,manifest.basic: no visible global function definition for 'plotnScree' screeplot,manifest.data: no visible global function definition for 'parallel' screeplot,manifest.data: no visible global function definition for 'nScree' screeplot,manifest.data: no visible global function definition for 'plotnScree' show,manifest.data: no visible global function definition for 'mshapiro.test' show,manifest.data: no visible global function definition for 'mvnorm.etest' uniquenesses,restrictions : .local: no visible binding for global variable 'restrictions' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... [16s] OK ** running examples for arch 'x64' ... [18s] OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' ... [27s] OK Running 'testsCFA.R' [0s] Running 'testsEFA.R' [0s] Running 'testsMANIFEST.R' [10s] Running 'testsMICRO.R' [10s] Running 'testsRESTRICTIONS.R' [6s] Running 'testsSEFA.R' [0s] ** running tests for arch 'x64' ... [30s] OK Running 'testsCFA.R' [0s] Running 'testsEFA.R' [0s] Running 'testsMANIFEST.R' [10s] Running 'testsMICRO.R' [12s] Running 'testsRESTRICTIONS.R' [6s] Running 'testsSEFA.R' [0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... [1s] OK * checking re-building of vignette outputs ... [11s] OK * checking PDF version of manual ... OK * DONE NOTE: There were 3 notes.