* using log directory 'd:/Rcompile/CRANpkg/local/3.1/HBSTM.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'HBSTM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HBSTM' version '1.0.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'HBSTM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE [,Autoregressive-character-missing-missing : .local: warning in switch(EXP = i, avect = return(x@avect), a0vect = return(x@a0vect), a0L = return(x@a0L), spatialA = return(x@spatialA), sigma2A = return(x@sigma2A), H = return(x@H), subdiag = return(x@subdiag), stop("Error: ", i, " is not a Autoregressive slot")): partial argument match of 'EXP' to 'EXPR' [,Autoregressive0-character-missing-missing : .local: warning in switch(EXP = i, a0L0 = return(x@a0L0), siga0L0 = return(x@siga0L0), sigma2A0 = return(x@sigma2A0), spatialA0 = return(x@spatialA0), subdiag0 = return(x@subdiag0), stop("Error: ", i, " is not a Autoregressive0 slot")): partial argument match of 'EXP' to 'EXPR' [,CosSinMatrix-character-missing-missing : .local: warning in switch(EXP = i, cosMat = return(x@cosMat), sinMat = return(x@sinMat), littlecosMat = return(x@littlecosMat), littlesinMat = return(x@littlesinMat), stop("Error: ", i, " is not a CosSinMatrix slot")): partial argument match of 'EXP' to 'EXPR' [,HBSTM-character-missing-missing : .local: warning in switch(EXP = i, Parameters = return(x@Parameters), Hyperpriors = return(x@Hyperpriors), seed = return(x@seed), mse = return(x@mse), iterations = return(x@iterations), newGrid = return(x@newGrid), K = return(x@K), Zt = return(x@Zt), fitted = return(x@fitted), residuals = return(x@residuals), MCMCsamp = return(x@MCMCsamp), MCMCclass = return(x@MCMCclass), stop("Error: ", i, " is not a STmodel slot")): partial argument match of 'EXP' to 'EXPR' [,Hyperpriors-character-missing-missing : .local: warning in switch(EXP = i, Mu0 = return(x@Mu0), Mt0 = return(x@Mt0), Xt0 = return(x@Xt0), sigma2Y0 = return(x@sigma2Y0), sigma2E0 = return(x@sigma2E0), stop("Error: ", i, " is not a Hyperpriors slot")): partial argument match of 'EXP' to 'EXPR' [,Mt-character-missing-missing : .local: warning in switch(EXP = i, Mt = return(x@Mt), seas = return(x@seas), stop("Error: ", i, " is not a Mt slot")): partial argument match of 'EXP' to 'EXPR' [,Mt0-character-missing-missing : .local: warning in switch(EXP = i, seas0 = return(x@seas0), stop("Error: ", i, " is not a Mt0 slot")): partial argument match of 'EXP' to 'EXPR' [,MtAux-character-missing-missing : .local: warning in switch(EXP = i, seas = return(x@seas), stop("Error: ", i, " is not a MtAux slot")): partial argument match of 'EXP' to 'EXPR' [,Mu-character-missing-missing : .local: warning in switch(EXP = i, muvect = return(x@muvect), mu0vect = return(x@mu0vect), mu0L = return(x@mu0L), sigma2Mu = return(x@sigma2Mu), spatialMu = return(x@spatialMu), stop("Error: ", i, " is not a Mu slot")): partial argument match of 'EXP' to 'EXPR' [,Mu0-character-missing-missing : .local: warning in switch(EXP = i, mu0L0 = return(x@mu0L0), sigmu0L0 = return(x@sigmu0L0), sigma2Mu0 = return(x@sigma2Mu0), spatialMu0 = return(x@spatialMu0), stop("Error: ", i, " is not a Mu0 slot")): partial argument match of 'EXP' to 'EXPR' [,Parameters-character-missing-missing : .local: warning in switch(EXP = i, Mu = return(x@Mu), Mt = return(x@Mt), Xt = return(x@Xt), Yt = return(x@Yt), sigma2Y = return(x@sigma2Y), sigma2E = return(x@sigma2E), stop("Error: ", i, " is not a Parameters slot")): partial argument match of 'EXP' to 'EXPR' [,Seas-character-missing-missing : .local: warning in switch(EXP = i, w = return(x@w), fvect = return(x@fvect), f0L = return(x@f0L), gvect = return(x@gvect), g0L = return(x@g0L), stop("Error: ", i, " is not a Seas slot")): partial argument match of 'EXP' to 'EXPR' [,Seas0-character-missing-missing : .local: warning in switch(EXP = i, sigf0L0 = return(x@sigf0L0), f0L0 = return(x@f0L0), sigg0L0 = return(x@sigg0L0), g0L0 = return(x@g0L0), stop("Error: ", i, " is not a Seas0 slot")): partial argument match of 'EXP' to 'EXPR' [,SpatC-character-missing-missing : .local: warning in switch(EXP = i, Matalpha = return(x@Matalpha), Matbeta = return(x@Matbeta), Matphi = return(x@Matphi), Mattheta = return(x@Mattheta), stop("Error: ", i, " is not a SpatC slot")): partial argument match of 'EXP' to 'EXPR' [,SpatH-character-missing-missing : .local: warning in switch(EXP = i, west = return(x@west), east = return(x@east), north = return(x@north), south = return(x@south), southwest = return(x@southwest), northeast = return(x@northeast), southeast = return(x@southeast), northwest = return(x@northwest), stop("Error: ", i, " is not a SpatH slot")): partial argument match of 'EXP' to 'EXPR' [,SpatParam-character-missing-missing : .local: warning in switch(EXP = i, alpha = return(x@alpha), beta = return(x@beta), phi = return(x@phi), theta = return(x@theta), Cmat = return(x@Cmat), lags = return(x@lags), dirs = return(x@dirs), stop("Error: ", i, " is not a SpatParam slot")): partial argument match of 'EXP' to 'EXPR' [,SpatParam0-character-missing-missing : .local: warning in switch(EXP = i, alpha0 = return(x@alpha0), beta0 = return(x@beta0), phi0 = return(x@phi0), theta0 = return(x@theta0), stop("Error: ", i, " is not a SpatParam0 slot")): partial argument match of 'EXP' to 'EXPR' [,VectSubdiag-character-missing-missing : .local: warning in switch(EXP = i, east = return(x@east), west = return(x@west), north = return(x@north), south = return(x@south), southeast = return(x@southeast), northwest = return(x@northwest), southwest = return(x@southwest), northeast = return(x@northeast), lags = return(x@lags), dirs = return(x@dirs), stop("Error: ", i, " is not a VectSubdiag slot")): partial argument match of 'EXP' to 'EXPR' [,VectSubdiag0-character-missing-missing : .local: warning in switch(EXP = i, east0 = return(x@east0), west0 = return(x@west0), north0 = return(x@north0), south0 = return(x@south0), southeast0 = return(x@southeast0), northwest0 = return(x@northwest0), southwest0 = return(x@southwest0), northeast0 = return(x@northeast0), stop("Error: ", i, " is not a VectSubdiag0 slot")): partial argument match of 'EXP' to 'EXPR' [,Xt-character-missing-missing : .local: warning in switch(EXP = i, Xt = return(x@Xt), X0 = return(x@X0), sigma2N = return(x@sigma2N), AR = return(x@AR), templags = return(x@templags), stop("Error: ", i, " is not a Xt slot")): partial argument match of 'EXP' to 'EXPR' [,Xt0-character-missing-missing : .local: warning in switch(EXP = i, X00 = return(x@X00), sigma2X00 = return(x@sigma2X00), AR0 = return(x@AR0), sigma2N0 = return(x@sigma2N0), stop("Error: ", i, " is not a Xt0 slot")): partial argument match of 'EXP' to 'EXPR' [<-,Autoregressive-character-missing : .local: warning in switch(EXP = i, avect = x@avect <- value, a0vect = x@a0vect <- value, a0L = x@a0L <- value, spatialA = x@spatialA <- value, sigma2A = x@sigma2A <- value, H = x@H <- value, subdiag = x@subdiag <- value): partial argument match of 'EXP' to 'EXPR' [<-,Autoregressive0-character-missing : .local: warning in switch(EXP = i, a0L0 = x@a0L0 <- value, siga0L0 = x@siga0L0 <- value, sigma2A0 = x@sigma2A0 <- value, spatialA0 = x@spatialA0 <- value, subdiag0 = x@subdiag0 <- value): partial argument match of 'EXP' to 'EXPR' [<-,CosSinMatrix-character-missing : .local: warning in switch(EXP = i, cosMat = x@cosMat <- value, sinMat = x@sinMat <- value, littlecosMat = x@littlecosMat <- value, littlesinMat = x@littlesinMat <- value): partial argument match of 'EXP' to 'EXPR' [<-,HBSTM-character-missing : .local: warning in switch(EXP = i, Parameters = x@Parameters <- value, Hyperpriors = x@Hyperpriors <- value, seed = x@seed <- value, mse = x@mse <- value, iterations = x@iterations <- value, newGrid = x@newGrid <- value, K = x@K <- value, Zt = x@Zt <- value, fitted = x@fitted <- value, residuals = x@residuals <- value, MCMCsamp = x@MCMCsamp <- value, MCMCclass = x@MCMCclass <- value): partial argument match of 'EXP' to 'EXPR' [<-,Hyperpriors-character-missing : .local: warning in switch(EXP = i, Mu0 = x@Mu0 <- value, Mt0 = x@Mt0 <- value, Xt0 = x@Xt0 <- value, sigma2Y0 = x@sigma2Y0 <- value, sigma2E0 = x@sigma2E0 <- value): partial argument match of 'EXP' to 'EXPR' [<-,Mt-character-missing : .local: warning in switch(EXP = i, Mt = x@Mt <- value, seas = x@seas <- value): partial argument match of 'EXP' to 'EXPR' [<-,Mt0-character-missing : .local: warning in switch(EXP = i, seas0 = x@seas0 <- value): partial argument match of 'EXP' to 'EXPR' [<-,MtAux-character-missing : .local: warning in switch(EXP = i, seas = x@seas <- value): partial argument match of 'EXP' to 'EXPR' [<-,Mu-character-missing : .local: warning in switch(EXP = i, muvect = x@muvect <- value, mu0vect = x@mu0vect <- value, mu0L = x@mu0L <- value, sigma2Mu = x@sigma2Mu <- value, spatialMu = x@spatialMu <- value): partial argument match of 'EXP' to 'EXPR' [<-,Mu0-character-missing : .local: warning in switch(EXP = i, mu0L0 = x@mu0L0 <- value, sigmu0L0 = x@sigmu0L0 <- value, sigma2Mu0 = x@sigma2Mu0 <- value, spatialMu0 = x@spatialMu0 <- value): partial argument match of 'EXP' to 'EXPR' [<-,Parameters-character-missing : .local: warning in switch(EXP = i, Mu = x@Mu <- value, Mt = x@Mt <- value, Xt = x@Xt <- value, Yt = x@Yt <- value, sigma2Y = x@sigma2Y <- value, sigma2E = x@sigma2E <- value): partial argument match of 'EXP' to 'EXPR' [<-,Seas-character-missing : .local: warning in switch(EXP = i, w = x@w <- value, fvect = x@fvect <- value, f0L = x@f0L <- value, gvect = x@gvect <- value, g0L = x@g0L <- value): partial argument match of 'EXP' to 'EXPR' [<-,Seas0-character-missing : .local: warning in switch(EXP = i, sigf0L0 = x@sigf0L0 <- value, f0L0 = x@f0L0 <- value, sigg0L0 = x@sigg0L0 <- value, g0L0 = x@g0L0 <- value): partial argument match of 'EXP' to 'EXPR' [<-,SpatC-character-missing : .local: warning in switch(EXP = i, Matalpha = x@Matalpha <- value, Matbeta = x@Matbeta <- value, Matphi = x@Matphi <- value, Mattheta = x@Mattheta <- value): partial argument match of 'EXP' to 'EXPR' [<-,SpatH-character-missing : .local: warning in switch(EXP = i, west = x@west <- value, east = x@east <- value, north = x@north <- value, south = x@south <- value, southwest = x@southwest <- value, northeast = x@northeast <- value, southeast = x@southeast <- value, northwest = x@northwest <- value): partial argument match of 'EXP' to 'EXPR' [<-,SpatParam-character-missing : .local: warning in switch(EXP = i, alpha = x@alpha <- value, beta = x@beta <- value, phi = x@phi <- value, theta = x@theta <- value, Cmat = x@Cmat <- value, lags = x@lags <- value, dirs = x@dirs <- value): partial argument match of 'EXP' to 'EXPR' [<-,SpatParam0-character-missing : .local: warning in switch(EXP = i, alpha0 = x@alpha0 <- value, beta0 = x@beta0 <- value, phi0 = x@phi0 <- value, theta0 = x@MatTheta <- value): partial argument match of 'EXP' to 'EXPR' [<-,VectSubdiag-character-missing : .local: warning in switch(EXP = i, east = x@east <- value, west = x@west <- value, north = x@north <- value, south = x@south <- value, southeast = x@southeast <- value, northwest = x@northwest <- value, southwest = x@southwest <- value, northeast = x@northeast <- value, lags = x@lags <- value, dirs = x@dirs <- value): partial argument match of 'EXP' to 'EXPR' [<-,VectSubdiag0-character-missing : .local: warning in switch(EXP = i, east0 = x@east0 <- value, west0 = x@west0 <- value, north0 = x@north0 <- value, south0 = x@south0 <- value, southeast0 = x@southeast0 <- value, northwest0 = x@northwest0 <- value, southwest0 = x@southwest0 <- value, northeast0 = x@northeast0 <- value): partial argument match of 'EXP' to 'EXPR' [<-,Xt-character-missing : .local: warning in switch(EXP = i, Xt = x@Xt <- value, X0 = x@X0 <- value, sigma2N = x@sigma2N <- value, AR = x@AR <- value, templags = x@templags <- value): partial argument match of 'EXP' to 'EXPR' [<-,Xt0-character-missing : .local: warning in switch(EXP = i, X00 = x@X00 <- value, sigma2X00 = x@sigma2X00 <- value, AR0 = x@AR0 <- value, sigma2N0 = x@sigma2N0 <- value): partial argument match of 'EXP' to 'EXPR' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... [1s] OK * checking PDF version of manual ... OK * DONE NOTE: There was 1 note.