* using log directory 'd:/Rcompile/CRANpkg/local/3.1/PhaseType.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'PhaseType/DESCRIPTION' ... OK * this is package 'PhaseType' version '0.1.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'PhaseType' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'ggplot2' 'reshape' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot.phtMCMC: no visible global function definition for 'ggplot' plot.phtMCMC: no visible global function definition for 'melt' plot.phtMCMC: no visible global function definition for 'geom_line' plot.phtMCMC: no visible global function definition for 'aes_string' plot.phtMCMC: no visible global function definition for 'geom_smooth' plot.phtMCMC: no visible global function definition for 'facet_wrap' plot.phtMCMC: no visible global function definition for 'ggtitle' plot.phtMCMC: no visible global function definition for 'xlab' plot.phtMCMC: no visible global function definition for 'ylab' plot.phtMCMC: no visible global function definition for 'geom_density' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... NOTE File 'PhaseType/libs/i386/PhaseType.dll': Found 'rand', possibly from 'rand' (C) Object: 'LJMA_arms.o' File 'PhaseType/libs/x64/PhaseType.dll': Found 'rand', possibly from 'rand' (C) Object: 'LJMA_arms.o' Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor the system RNG. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking examples ... ** running examples for arch 'i386' ... [9s] OK ** running examples for arch 'x64' ... [10s] OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' ... [2s] OK Running 'phtMCMC.R' [1s] Running 'phtMCMC2.R' [1s] ** running tests for arch 'x64' ... [2s] OK Running 'phtMCMC.R' [1s] Running 'phtMCMC2.R' [1s] * checking PDF version of manual ... OK * DONE NOTE: There were 3 notes.