* using log directory 'd:/Rcompile/CRANpkg/local/3.1/RSofia.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'RSofia/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RSofia' version '1.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'RSofia' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'methods' which was already attached by Depends. Please remove these calls from your code. Package in Depends field not imported from: 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'RSofia/R/zzz.R': .onLoad has wrong argument list 'pkgname, libname' .onLoad calls: require("methods", character = TRUE, quietly = TRUE) Package startup functions should have two arguments with names starting with 'lib' and 'pkg', respectively. Package startup functions should not change the search path. See section 'Good practice' in '?.onAttach'. .onLoad: warning in require("methods", character = TRUE, quietly = TRUE): partial argument match of 'character' to 'character.only' * checking Rd files ... NOTE prepare_Rd: parse_formula.Rd:23-26: Dropping empty section \seealso prepare_Rd: sofia.Rd:80: Dropping empty section \details * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... NOTE Found the following Makefile(s) without a final LF: inst/sofia-ml-read-only/sofia-ml/src/Makefile Some 'make' programs ignore lines not ending in LF. * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... NOTE File 'RSofia/libs/i386/RSofia.dll': Found 'rand', possibly from 'rand' (C) Objects: 'sf-weight-vector.o', 'sofia-ml-methods.o' Found 'srand', possibly from 'srand' (C) Object: 'RSofiaFacade.o' File 'RSofia/libs/x64/RSofia.dll': Found 'rand', possibly from 'rand' (C) Objects: 'sf-weight-vector.o', 'sofia-ml-methods.o' Found 'srand', possibly from 'srand' (C) Object: 'RSofiaFacade.o' Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor the system RNG. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking examples ... ** running examples for arch 'i386' ... [1s] OK ** running examples for arch 'x64' ... [1s] OK * checking PDF version of manual ... OK * DONE NOTE: There were 5 notes.