* using log directory 'd:/Rcompile/CRANpkg/local/3.1/fdaMixed.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'fdaMixed/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'fdaMixed' version '0.4' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'fdaMixed' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Calls with DUP != TRUE: .Call("boxcoxTransform", mu, geometricMean, Yoriginal, Ymat, DUP = FALSE, package = "fdaMixed") .Call("fdaTrace", left, right, coefs[3], Re(roots$left), Im(roots$left), Re(roots$right), Im(roots$right), Fleft, Fright, NN, DUP = FALSE, PACKAGE = "fdaMixed") .Call("marginalANOVA", G, Ymat, GammaMat, Zmat, Yres, betaHat, uBLUP, uBLUPinvG, Cbeta, Cu, DUP = FALSE, package = "fdaMixed") .Call("fdaEngine", left, right, (right - left)/NN * coefs[3], Re(roots$left), Im(roots$left), Re(roots$right), Im(roots$right), Fleft, Fright, G, uBLUPinvG, proj.uBLUPinvG, dummyVec, dummyVec, xBLUP.uBLUPinvG, condRes.uBLUPinvG, dummyMat, dummyMat, logLik.uBLUPinvG, DUP = FALSE, PACKAGE = "fdaMixed") .Call("fdaEngine", left, right, (right - left)/NN * coefs[3], Re(roots$left), Im(roots$left), Re(roots$right), Im(roots$right), Fleft, Fright, G, Yres, projMat, dummyVec, dummyVec, xBLUP, condRes, dummyMat, dummyMat, logLikVec, DUP = FALSE, PACKAGE = "fdaMixed") .Call("fdaEngine", left, right, (right - left)/NN * coefs[3], Re(roots$left), Im(roots$left), Re(roots$right), Im(roots$right), Fleft, Fright, G, Ymat, projMat, betaHat, uBLUP, xBLUP, condRes, Cbeta, Cu, logLikVec, DUP = FALSE, PACKAGE = "fdaMixed") DUP = FALSE is deprecated and will be disabled in future versions of R. * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [5s] OK ** running examples for arch 'x64' ... [5s] OK * checking PDF version of manual ... OK * DONE NOTE: There was 1 note.