* using log directory 'd:/Rcompile/CRANpkg/local/3.1/gRc.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'gRc/DESCRIPTION' ... OK * this is package 'gRc' version '0.4-1' * package encoding: latin1 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'gRc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'Rgraphviz' which was already attached by Depends. Please remove these calls from your code. Packages in Depends field not imported from: 'Rgraphviz' 'gRbase' 'graph' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .bootstrapVCOV: no visible global function definition for 'mvrnorm' .buildStandardRepresentation: no visible global function definition for 'unlistPrim' .buildStandardRepresentation: no visible global function definition for 'uniquePrim' .buildStandardRepresentation: no visible binding for global variable 'names2pairs' .buildStandardRepresentation : : no visible global function definition for 'rowSumsPrim' .buildStandardRepresentation: no visible global function definition for 'removeRedundant' .rconIPM: no visible global function definition for 'ellK' .redundant.index: no visible global function definition for 'subsetof' fitIPSedge: no visible global function definition for 'ellK' fitIPSset: no visible global function definition for 'ellK' fitNR: no visible global function definition for 'uniquePrim' fitNR: no visible global function definition for 'setdiffPrim' fitNR: no visible global function definition for 'ellK' fitNR2: no visible global function definition for 'uniquePrim' fitNR2: no visible global function definition for 'setdiffPrim' fitNR2: no visible global function definition for 'ellK' getedges: no visible global function definition for 'names2pairs' rconIPM: no visible global function definition for 'ellK' rconScoreMatch: no visible global function definition for 'ellK' rcorIPM: no visible global function definition for 'ellK' rcorScoreMatch: no visible global function definition for 'ellK' rcorScoreTheta: no visible global function definition for 'ellK' refitA: no visible global function definition for 'setdiffPrim' scoring: no visible global function definition for 'ellK' scoring: no visible global function definition for 'unlistPrim' stepjoin1: no visible global function definition for 'fit' update.rcox: no visible global function definition for 'unlistPrim' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [3s] OK ** running examples for arch 'x64' ... [4s] OK * checking PDF version of manual ... OK * DONE NOTE: There were 2 notes.