* using log directory 'd:/Rcompile/CRANpkg/local/3.1/randomForest.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'randomForest/DESCRIPTION' ... OK * this is package 'randomForest' version '4.6-12' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'randomForest' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Calls with DUP != TRUE: .C("regForest", as.double(x), ypred = double(ntest), as.integer(mdim), as.integer(ntest), as.integer(ntree), object$forest$leftDaughter, object$forest$rightDaughter, object$forest$nodestatus, nrnodes, object$forest$xbestsplit, object$forest$nodepred, object$forest$bestvar, object$forest$ndbigtree, object$forest$ncat, as.integer(maxcat), as.integer(predict.all), treepred = as.double(treepred), as.integer(proximity), proximity = as.double(proxmatrix), nodes = as.integer(nodes), nodexts = as.integer(nodexts), DUP = FALSE, PACKAGE = "randomForest") .C("classForest", mdim = as.integer(mdim), ntest = as.integer(ntest), nclass = as.integer(object$forest$nclass), maxcat = as.integer(maxcat), nrnodes = as.integer(nrnodes), jbt = as.integer(ntree), xts = as.double(x), xbestsplit = as.double(object$forest$xbestsplit), pid = object$forest$pid, cutoff = as.double(cutoff), countts = as.double(countts), treemap = as.integer(aperm(object$forest$treemap, c(2, 1, 3))), nodestatus = as.integer(object$forest$nodestatus), cat = as.integer(object$forest$ncat), nodepred = as.integer(object$forest$nodepred), treepred = as.integer(treepred), jet = as.integer(numeric(ntest)), bestvar = as.integer(object$forest$bestvar), nodexts = as.integer(nodexts), ndbigtree = as.integer(object$forest$ndbigtree), predict.all = as.integer(predict.all), prox = as.integer(proximity), proxmatrix = as.double(proxmatrix), nodes = as.integer(nodes), DUP = FALSE, PACKAGE = "randomForest") .C("classRF", x = x, xdim = as.integer(c(p, n)), y = as.integer(y), nclass = as.integer(nclass), ncat = as.integer(ncat), maxcat = as.integer(maxcat), sampsize = as.integer(sampsize), strata = if (Stratify) as.integer(strata) else integer(1), Options = as.integer(c(addclass, importance, localImp, proximity, oob.prox, do.trace, keep.forest, replace, Stratify, keep.inbag)), ntree = as.integer(ntree), mtry = as.integer(mtry), ipi = as.integer(ipi), classwt = as.double(cwt), cutoff = as.double(threshold), nodesize = as.integer(nodesize), outcl = integer(nsample), counttr = integer(nclass * nsample), prox = prox, impout = impout, impSD = impSD, impmat = impmat, nrnodes = as.integer(nrnodes), ndbigtree = integer(ntree), nodestatus = integer(nt * nrnodes), bestvar = integer(nt * nrnodes), treemap = integer(nt * 2 * nrnodes), nodepred = integer(nt * nrnodes), xbestsplit = double(nt * nrnodes), errtr = double((nclass + 1) * ntree), testdat = as.integer(testdat), xts = as.double(xtest), clts = as.integer(ytest), nts = as.integer(ntest), countts = double(nclass * ntest), outclts = as.integer(numeric(ntest)), labelts = as.integer(labelts), proxts = proxts, errts = error.test, inbag = if (keep.inbag) matrix(integer(n * ntree), n) else integer(n), DUP = FALSE, PACKAGE = "randomForest") .C("regRF", x, as.double(y), as.integer(c(n, p)), as.integer(sampsize), as.integer(nodesize), as.integer(nrnodes), as.integer(ntree), as.integer(mtry), as.integer(c(importance, localImp, nPerm)), as.integer(ncat), as.integer(maxcat), as.integer(do.trace), as.integer(proximity), as.integer(oob.prox), as.integer(corr.bias), ypred = double(n), impout = impout, impmat = impmat, impSD = impSD, prox = prox, ndbigtree = integer(ntree), nodestatus = matrix(integer(nrnodes * nt), ncol = nt), leftDaughter = matrix(integer(nrnodes * nt), ncol = nt), rightDaughter = matrix(integer(nrnodes * nt), ncol = nt), nodepred = matrix(double(nrnodes * nt), ncol = nt), bestvar = matrix(integer(nrnodes * nt), ncol = nt), xbestsplit = matrix(double(nrnodes * nt), ncol = nt), mse = double(ntree), keep = as.integer(c(keep.forest, keep.inbag)), replace = as.integer(replace), testdat = as.integer(testdat), xts = xtest, ntest = as.integer(ntest), yts = as.double(ytest), labelts = as.integer(labelts), ytestpred = double(ntest), proxts = proxts, msets = double(if (labelts) ntree else 1), coef = double(2), oob.times = integer(n), inbag = if (keep.inbag) matrix(integer(n * ntree), n) else integer(1), DUP = FALSE, PACKAGE = "randomForest") DUP = FALSE is deprecated and will be disabled in future versions of R. * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... [6s] OK ** running examples for arch 'x64' ... [5s] OK * checking PDF version of manual ... OK * DONE NOTE: There was 1 note.