* using log directory 'd:/Rcompile/CRANpkg/local/3.1/remix.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'remix/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'remix' version '2.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'remix' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: 'plyr' 'survival' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. ':::' call which should be '::': 'Hmisc:::label.default' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE cross: no visible binding for global variable 'is.Surv' is.numeric.and.not.surv: no visible global function definition for 'is.Surv' remix: no visible global function definition for 'is.formula' remix : : no visible global function definition for 'is.Surv' remix: no visible binding for global variable 'is.Surv' remix: no visible global function definition for 'llply' summarize.by: no visible global function definition for 'dlply' summarize.by: no visible global function definition for '.' summarize.data.frame.by: no visible global function definition for 'dlply' survival: no visible global function definition for 'survfit' survival: no visible global function definition for 'daply' survival: no visible global function definition for '.' test.survival.logrank: no visible global function definition for 'survdiff' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'as.data.frame.correlation': 'as.data.frame.correlation' S3 methods shown with full name in documentation object 'as.data.frame.freq': 'as.data.frame.freq' S3 methods shown with full name in documentation object 'as.data.frame.summarize': 'as.data.frame.summarize' S3 methods shown with full name in documentation object 'as.data.frame.summarize.by': 'as.data.frame.summarize.by' S3 methods shown with full name in documentation object 'as.data.frame.survival': 'as.data.frame.survival' S3 methods shown with full name in documentation object 'as.data.frame.tabular': 'as.data.frame.tabular' The \usage entries for S3 methods should use the \method markup and not their full name. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [3s] OK * checking PDF version of manual ... OK * DONE NOTE: There were 3 notes.