* using log directory 'd:/Rcompile/CRANpkg/local/3.1/superpc.Rcheck' * using R version 3.1.3 (2015-03-09) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'superpc/DESCRIPTION' ... OK * this is package 'superpc' version '1.09' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'superpc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'survival' which was already attached by Depends. Please remove these calls from your code. Package in Depends field not imported from: 'survival' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE gen.y.mat2: no visible global function definition for 'survfit' superpc.cv: no visible global function definition for 'coxph' superpc.cv: no visible global function definition for 'coxph.control' superpc.fit.to.outcome: no visible global function definition for 'coxph' superpc.fit.to.outcome: no visible global function definition for 'coxph.control' superpc.lrtest.curv: no visible global function definition for 'coxph' superpc.predictionplot: no visible binding for global variable 'shrinkages' superpc.predictionplot: no visible global function definition for 'survfit' surv.to.class2: no visible global function definition for 'survfit' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [25s] OK * checking PDF version of manual ... OK * DONE NOTE: There were 2 notes.