A Package for Graphical Modelling in R


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Documentation for package ‘gRbase’ version 1.7-5

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A B C D E G I J L M N P Q R S T U V W

-- A --

adjList2M Coercion of graphs
ancestors Simple operations on undirected and directed acyclic graphs.
ancestralGraph Simple operations on undirected and directed acyclic graphs.
ancestralSet Simple operations on undirected and directed acyclic graphs.
aperm__ Operations on multidimensional tables (arrays).
arrayCombine Combine arrays
arrayExtendDomain Combine arrays
as.adjMAT Coercion of graphs
as.parray Representation of and operations on multidimensional tables
ashtrees Crown dieback in ash trees

-- B --

BodyFat Body Fat Data
breastcancer Gene expression signatures for p53 mutation status in 250 breast cancer samples

-- C --

cad1 Coronary artery disease data
cad2 Coronary artery disease data
carcass Lean meat contents of 344 pig carcasses
carcassall Lean meat contents of 344 pig carcasses
chestSim Simulated data from the Chest Clinic example
chestSim1000 Simulated data from the Chest Clinic example
chestSim10000 Simulated data from the Chest Clinic example
chestSim100000 Simulated data from the Chest Clinic example
chestSim500 Simulated data from the Chest Clinic example
chestSim50000 Simulated data from the Chest Clinic example
children Simple operations on undirected and directed acyclic graphs.
closure Simple operations on undirected and directed acyclic graphs.
colwiseProd Utility functions for gRbase
combnPrim Generate All Combinations of n Elements Taken m at a Time
compareModels Generic function for model comparison
compile Compile and propagate functions
conc2pcor Partial correlation (matrix)
cov2pcor Partial correlation (matrix)

-- D --

dag Create undirected and directed graphs
dagList Create undirected and directed graphs
dagList2dgCMatrix Create undirected and directed graphs
dagList2graphNEL Coercion of graphs
dagList2M Coercion of graphs
dagList2matrix Create undirected and directed graphs
data2parray Representation of and operations on multidimensional tables
dietox Growth curves of pigs in a 3x3 factorial experiment
dumping Gastric Dumping

-- E --

edgeList Find edges in a graph and edges not in a graph.
edgeList.default Find edges in a graph and edges not in a graph.
edgeListMAT Find edges in a graph and edges not in a graph.

-- G --

getCliques Get cliques of an undirected graph
getCliques.default Get cliques of an undirected graph
getCliques.graphNEL Get cliques of an undirected graph
get_subset_ Utility functions for gRbase
get_superset_ Utility functions for gRbase
glist2adjMAT Creates adjacency matrix for a graph from a list of generators
graphNEL2adjMAT Coercion of graphs
graphNEL2dgCMatrix Coercion of graphs
graphNEL2ftM Coercion of graphs
graphNEL2igraph Coercion of graphs
graphNEL2M Coercion of graphs
graphNEL2MAT Coercion of graphs
graphNEL2matrix Coercion of graphs
graphNEL2tfM Coercion of graphs
gRbase The package 'gRbase': summary information

-- I --

iplot Function for plotting graphs using the 'igraph' package.
iplot.graphNEL Function for plotting graphs using the 'igraph' package.
is.adjMAT Check properties of graphs.
is.complete Simple operations on undirected and directed acyclic graphs.
is.DAG Check properties of graphs.
is.DAG.default Check properties of graphs.
is.DAG.graphNEL Check properties of graphs.
is.DAGMAT Check properties of graphs.
is.decomposition Simple operations on undirected and directed acyclic graphs.
is.DG Check properties of graphs.
is.DG.default Check properties of graphs.
is.DG.graphNEL Check properties of graphs.
is.DGMAT Check properties of graphs.
is.insetlist Set operations
is.simplicial Simple operations on undirected and directed acyclic graphs.
is.subsetof Set operations
is.TUG Check properties of graphs.
is.TUG.default Check properties of graphs.
is.TUG.graphNEL Check properties of graphs.
is.TUGMAT Check properties of graphs.
is.UG Check properties of graphs.
is.UG.default Check properties of graphs.
is.UG.graphNEL Check properties of graphs.
is.UGMAT Check properties of graphs.
isDecomposable Properties of a generating class (for defining a graph)
isDecomposable.default Properties of a generating class (for defining a graph)
isGraphical Properties of a generating class (for defining a graph)
isGraphical.default Properties of a generating class (for defining a graph)
isin Set operations
is_subsetof_ Utility functions for gRbase

-- J --

jTree Create RIP ordering of the cliques of an undirected graph; create junction tree.
jTree.default Create RIP ordering of the cliques of an undirected graph; create junction tree.
jTreeMAT Create RIP ordering of the cliques of an undirected graph; create junction tree.
junctionTree Create RIP ordering of the cliques of an undirected graph; create junction tree.
junctionTree.default Create RIP ordering of the cliques of an undirected graph; create junction tree.
junctionTreeMAT Create RIP ordering of the cliques of an undirected graph; create junction tree.

-- L --

lizard Lizard behaviour
lizardAGG Lizard behaviour
lizardRAW Lizard behaviour

-- M --

M2adjList Coercion of graphs
M2dagList Coercion of graphs
M2graphNEL Coercion of graphs
M2ugList Coercion of graphs
math Mathematics marks for students
mathmark Mathematics marks for students
matrix2igraph Coercion of graphs
maxCliqueMAT Get cliques of an undirected graph
maximalSets Set operations
mcs Maximum cardinality search on undirected graph.
mcs.default Maximum cardinality search on undirected graph.
mcsmarked Maximum cardinality search on undirected graph.
mcsmarked.default Maximum cardinality search on undirected graph.
mcsmarkedMAT Maximum cardinality search on undirected graph.
mcsMAT Maximum cardinality search on undirected graph.
mildew Mildew fungus
milkcomp Milk composition data
milkcomp1 Milk composition data
minimalSets Set operations
minimalTriang Minimal triangulation of an undirected graph
minimalTriang.default Minimal triangulation of an undirected graph
minimalTriangMAT Minimal triangulation of an undirected graph
moralize Moralize a directed acyclic graph
moralize.default Moralize a directed acyclic graph
moralizeMAT Moralize a directed acyclic graph
mpd Maximal prime subgraph decomposition
mpd.default Maximal prime subgraph decomposition
mpdMAT Maximal prime subgraph decomposition

-- N --

nonEdgeList Find edges in a graph and edges not in a graph.
nonEdgeList.default Find edges in a graph and edges not in a graph.
nonEdgeListMAT Find edges in a graph and edges not in a graph.
Nutrimouse The Nutrimouse Dataset

-- P --

parents Simple operations on undirected and directed acyclic graphs.
parray Representation of and operations on multidimensional tables
propagate Compile and propagate functions

-- Q --

querygraph Query a graph

-- R --

random_dag Random directed acyclic graph
rats Weightloss of rats
reinis Risk factors for coronary heart disease.
removeRedundant Set operations
rip Create RIP ordering of the cliques of an undirected graph; create junction tree.
rip.default Create RIP ordering of the cliques of an undirected graph; create junction tree.
ripMAT Create RIP ordering of the cliques of an undirected graph; create junction tree.

-- S --

simplicialNodes Simple operations on undirected and directed acyclic graphs.
simulateArray Simulate data from array
subsetof Set operations

-- T --

tabAdd Operations on multidimensional tables (arrays).
tabAdd__ Operations on multidimensional tables (arrays).
tabAlign Operations on multidimensional tables (arrays).
tabAlign__ Operations on multidimensional tables (arrays).
tabCondProb Operations on multidimensional tables (arrays).
tabDiv Operations on multidimensional tables (arrays).
tabDiv0 Operations on multidimensional tables (arrays).
tabDiv0__ Operations on multidimensional tables (arrays).
tabDiv__ Operations on multidimensional tables (arrays).
tabEqual Operations on multidimensional tables (arrays).
tabEqual__ Operations on multidimensional tables (arrays).
tabExpand Operations on multidimensional tables (arrays).
tabExpand__ Operations on multidimensional tables (arrays).
tableDiv Compute table margin or table slice
tableGetSliceIndex Compute table margin or table slice
tableMargin Compute table margin or table slice
tableMult Compute table margin or table slice
tableOp Compute table margin or table slice
tableOp2 Compute table margin or table slice
tablePerm Compute table margin or table slice
tableSetSliceValue Compute table margin or table slice
tableSlice Compute table margin or table slice
tableSlicePrim Compute table margin or table slice
tabListAdd Operations on multidimensional tables (arrays).
tabListAdd__ Operations on multidimensional tables (arrays).
tabListMult Operations on multidimensional tables (arrays).
tabListMult__ Operations on multidimensional tables (arrays).
tabMarg Operations on multidimensional tables (arrays).
tabMarg__ Operations on multidimensional tables (arrays).
tabMult Operations on multidimensional tables (arrays).
tabMult__ Operations on multidimensional tables (arrays).
tabOp__ Operations on multidimensional tables (arrays).
tabPerm Operations on multidimensional tables (arrays).
tabSlice Operations on multidimensional tables (arrays).
tabSlice2Entries Operations on multidimensional tables (arrays).
tabSlice2Entries_ Operations on multidimensional tables (arrays).
tabSliceMult Operations on multidimensional tables (arrays).
tabSubt Operations on multidimensional tables (arrays).
tabSubt__ Operations on multidimensional tables (arrays).
topoSort Topological sort of vertices in directed acyclic graph
topoSort.default Topological sort of vertices in directed acyclic graph
topoSortMAT Topological sort of vertices in directed acyclic graph
topoSort_vparList Topological sort of vertices in directed acyclic graph
triangulate Triangulation of an undirected graph
triangulate.default Triangulation of an undirected graph
triangulateMAT Triangulation of an undirected graph

-- U --

ug Create undirected and directed graphs
ug2dag Coercion of graphs
ugList Create undirected and directed graphs
ugList2dgCMatrix Create undirected and directed graphs
ugList2graphNEL Coercion of graphs
ugList2M Coercion of graphs
ugList2matrix Create undirected and directed graphs

-- V --

vpaL2tfM Creates adjacency matrix for a graph from a list of generators
vpaList2adjMAT Creates adjacency matrix for a graph from a list of generators
vpar List of vertices and their parents for graph.
vpar.graphNEL List of vertices and their parents for graph.
vpar.Matrix List of vertices and their parents for graph.
vpar.matrix List of vertices and their parents for graph.
vparMAT List of vertices and their parents for graph.

-- W --

wine Chemical composition of wine