gaston-package | gaston |
%*%-method | Class '"bed.matrix"' |
AGT | AGT data set |
AGT.bim | AGT data set |
AGT.fam | AGT data set |
AGT.gen | AGT data set |
AGT.pop | AGT data set |
as.bed.matrix | Creation of a bed.matrix |
as.matrix-method | Class '"bed.matrix"' |
association.test | Association Test |
bed.loadings | SNP loadings |
bed.matrix | Class '"bed.matrix"' |
bed.matrix-class | Class '"bed.matrix"' |
cbind | Class '"bed.matrix"' |
cbind-method | Class '"bed.matrix"' |
coerce-method | Class '"bed.matrix"' |
dim-method | Class '"bed.matrix"' |
gaston | gaston |
GRM | Genetic Relationship Matrix |
head-method | Class '"bed.matrix"' |
LCT | LCT data set |
LCT.bim | LCT data set |
LCT.fam | LCT data set |
LCT.gen | LCT data set |
LCT.pop | LCT data set |
LD | Linkage Disequilibrium |
LD.thin | LD thinning |
lik.contour | Contour plot for two parameters likelihood |
lmm.aireml | Linear mixed model fitting with AIREML |
lmm.diago | Linear mixed model fitting with the diagonalization trick |
lmm.diago.likelihood | Likelihood of a linear mixed model |
lmm.simu | Linear mixed model data simulation |
matrix-method | Class '"bed.matrix"' |
mu | Class '"bed.matrix"' |
mu-method | Class '"bed.matrix"' |
mu<- | Class '"bed.matrix"' |
mu<--method | Class '"bed.matrix"' |
p | Class '"bed.matrix"' |
p-method | Class '"bed.matrix"' |
p<- | Class '"bed.matrix"' |
p<--method | Class '"bed.matrix"' |
random.pm | Random square definite positive matrix |
rbind | Class '"bed.matrix"' |
rbind-method | Class '"bed.matrix"' |
read.bed.matrix | Read a 'bed.matrix' |
read.vcf | Create a 'bed.matrix' from VCF files |
reshape.GRM | Reshape a Genetic Relationship Matrix |
select.inds | Subsetting from a 'bed.matrix' |
select.snps | Subsetting from a 'bed.matrix' |
set.genomic.sex | Genomic Sex |
set.hwe | Hardy-Weinberg Equilibrium |
set.stats | Basic statistics for a 'bed.matrix' |
show-method | Class '"bed.matrix"' |
sigma | Class '"bed.matrix"' |
sigma-method | Class '"bed.matrix"' |
sigma<- | Class '"bed.matrix"' |
sigma<--method | Class '"bed.matrix"' |
standardize | Class '"bed.matrix"' |
standardize-method | Class '"bed.matrix"' |
standardize<- | Class '"bed.matrix"' |
standardize<--method | Class '"bed.matrix"' |
TTN | TTN data set |
TTN.bim | TTN data set |
TTN.fam | TTN data set |
TTN.gen | TTN data set |
TTN.pop | TTN data set |
write.bed.matrix | Save a 'bed.matrix' |
[-method | Class '"bed.matrix"' |