Belief Propagation in Genotype-Phenotype Networks


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Documentation for package ‘geneNetBP’ version 1.0.0

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geneNetBP-package Belief Propagation in Genotype-Phenotype Networks
absorb.gnbp Absorb evidence and infer a genotype-phenotype network
fit.gnbp Fit a Conditional Gaussian Bayesian Network to QTL data
gen.evidence Generate a sequence of evidence for a continuous node in a conditional gaussian bayesian network.
geneNetBP Belief Propagation in Genotype-Phenotype Networks
mouse Mus Musculus Kidney eQTL data from Hageman et. al. (2011)
mousegeno Mus Musculus Kidney eQTL data from Hageman et. al. (2011)
mousepheno Mus Musculus Kidney eQTL data from Hageman et. al. (2011)
plot.gnbp Plot a Genotype-Phenotype Network
toy Toy example dataset
toygeno Toy example dataset
toypheno Toy example dataset
yeast Saccharomyces Cerevisiae eQTL data from Kruglak et. al. (2005)
yeastgeno Saccharomyces Cerevisiae eQTL data from Kruglak et. al. (2005)
yeastpheno Saccharomyces Cerevisiae eQTL data from Kruglak et. al. (2005)