A Code Generator for ODE-Based Models


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Documentation for package ‘rodeo’ version 0.3

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rodeo-package Package to Facilitate ODE-Based Modeling
arrangePars Assign Values to Parameters
arrangeVars Assign Values to State Variables
compile Create Fortran Library
exampleIdentifiers Declaration of Identifiers
exampleProcesses Declaration of Processes
exampleStoichiometry Specification of Stoichiometry
exportDF Export a Data Frame as HTML/TEX Code
forcingFunctions Generation of Forcing Functions in Fortran
generate Code Generator
initialize Initialize a 'rodeo' Object
plotStoichiometry Plot Qualitative Stoichiometry Matrix
rodeo 'rodeo' Reference Class
rodeo-class 'rodeo' Reference Class
solverInterface Wrapping of Generated Fortran for Use with Solver Packages
stoichiometry Return the Stoichiometry Matrix