Baseline Correction for Copy Number Data from Cancer Samples

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Documentation for package ‘CopyNumber450kCancer’ version 1.0.4

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CopyNumber450kCancer-package Baseline Correction for Accurate Copy Number Calling in 450k Methylation Array
AutoCorrectPeak This Function is the Main Function in CopyNumber450kCancer Package Which Correct the Baseline Based on the Density of the Probes/Segments
CopyNumber450kCancer Baseline Correction for Accurate Copy Number Calling in 450k Methylation Array
PlotCNV Plot the CNV Regions with the Density Plot
PlotMerged To Make Plots with Merged Regions
plotRegions Genomic Copy Number Plotting Function
print.CopyNumber450kCancer_data Print Function for CopyNumber450kCancer Data(x)
ReadData Function Reads the Data (i.e. regions file and sample list file) for CopyNumber450kCancer
ReviewPlot Interactive Plots for Baseline Correction in Copy Number Data