The package can prioritize candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways


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Documentation for package ‘PROFANCY’ version 1.0

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PROFANCY-package The PROFANCY package
DiseaseInfList The variables in the environment variable envData of the system
EHMNAddPathInfNetwork The variables in the environment variable envData of the system
envData The variables in the environment variable envData of the system
getCandidates Get candidate metabolites
getProvidedDiseaseName Get all disease names provided by PROFANCY package
getSeed Get seed metabolites
getTopDiseaseMetabolites Get the disease Risk metabolites
initializeData initialize environment envData
KEGGAddPathInfNetwork The variables in the environment variable envData of the system
MetaboliteInf The variables in the environment variable envData of the system
PROFANCY The PROFANCY package
ProstateCandidates The variables in the environment variable envData of the system
ProstateSeeds The variables in the environment variable envData of the system