Estimation, Gene Selection, and Survival Prediction Based on the Compound Covariate Method Under the Cox Proportional Hazard Model

Documentation for package ‘compound.Cox’ version 3.3

compound.Cox-package	Estimation, Gene Selection, and Survival Prediction Based on the Compound Covariate Method Under the Cox Proportional Hazard Model.
CG.Clayton	Copula-graphic estimator under the Clayton copula.
cindex.CV	Cross-validated c-index for measuring the predictive accuracy of a prognostic index under a copula-based dependent censoring model.
compound.Cox	Estimation, Gene Selection, and Survival Prediction Based on the Compound Covariate Method Under the Cox Proportional Hazard Model.
compound.reg	Compound shrinkage estimation under the Cox proportional hazard model
dependCox.reg	Univariate Cox regression under dependent censoring.
dependCox.reg.CV	Cox regression under dependent censoring.
Lung	Survival data for patients with non-small-cell lung cancer.
PBC	Primary biliary cirrhosis (PBC) of the liver data
uni.selection	Gene selection based on the univariate Cox regression
X.pathway	Generate a matrix of gene expressions in the presence of pathways
X.tag	Generate a matrix of gene expressions in the presence of tag genes