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| cpgi.anno | generate CpG islands GRangesList object |
| edmr | Empirical differentially methylated regions |
| filter.dmr | significant DMRs |
| genebody.anno | generate genebody GRangesList object |
| get.dmr.genes | get gene list based the genebody granges |
| get.hyper.dmr | get hyper-methylated DMRs |
| get.hypo.dmr | get hypo-methylated DMRs |
| myDiff | Example myDiff object. |
| myDiff.to.mixmdl | obtain mixtools model from 'myDiff' object |
| plotCost | plot cost function and the determined distance cutoff |
| plotdmrdistr | plot eDMR distribution over the subject genomic ranges |
| plotMdl1 | plot the fitted bimodal normal distribution for CpGs distances distribution |