Fast Principal Component Analysis for Outlier Detection


[Up] [Top]

Documentation for package ‘pcadapt’ version 3.0.4

Help Pages

pcadapt-package Principal Component Analysis for Outlier Detection.
cover.to.pool Simulate frequency matrix from genotype and coverage matrices
get.pc Get the principal component the most associated with a genetic marker
get.pool.matrix Convert genotypes to pooled samples
pcadapt Principal Component Analysis for outlier detection
plot.pcadapt pcadapt visualization tool
read.pcadapt File Converter
sample.geno Sample genotype matrix from pooled samples