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A B C D E F I L M N O P R S T W
| BiodiversityR-package | GUI for biodiversity, suitability and community ecology analysis |
| accumcomp | Alternative Species Accumulation Curve Results |
| accumplot | Alternative Species Accumulation Curve Results |
| accumresult | Alternative Species Accumulation Curve Results |
| add.spec.scores | Add Species Scores to Unconstrained Ordination Results |
| balanced.specaccum | Balanced Species Accumulation Curves |
| BCI.env | Barro Colorado Island Quadrat Descriptions |
| BiodiversityR | GUI for biodiversity, suitability and community ecology analysis |
| BiodiversityRGUI | GUI for Biodiversity, Community Ecology and Ensemble Suitability Analysis |
| CAPdiscrim | Canonical Analysis of Principal Coordinates based on Discriminant Analysis |
| caprescale | Rescaling of Capscale Results to Reflect Total Sums of Squares Of Distance Matrix |
| check.datasets | Synchronize Community and Environmental Datasets |
| check.ordiscores | Synchronize Community and Environmental Datasets |
| crosstabanalysis | Presence-absence Analysis by Cross Tabulation |
| deviancepercentage | Calculate Percentage and Significance of Deviance Explained by a GLM |
| dist.eval | Distance Matrix Evaluation |
| dist.zeroes | Distance Matrix Transformation |
| distdisplayed | Compare Distance Displayed in Ordination Diagram with Distances of Distance Matrix |
| disttransform | Community Matrix Transformation |
| diversitycomp | Alternative Diversity Results |
| diversityresult | Alternative Diversity Results |
| diversityvariables | Alternative Diversity Results |
| ensemble.accepted.categories | Suitability mapping based on ensembles of modelling algorithms: handling of categorical data |
| ensemble.analogue | Climate analogues from climatic distance raster layers. |
| ensemble.analogue.object | Climate analogues from climatic distance raster layers. |
| ensemble.area | Suitability mapping based on ensembles of modelling algorithms: consensus mapping |
| ensemble.batch | Suitability mapping based on ensembles of modelling algorithms: batch processing |
| ensemble.bioclim | Suitability mapping based on the BIOCLIM algorithm |
| ensemble.bioclim.graph | Graphs of bioclimatic ranges of species and climates |
| ensemble.bioclim.graph.data | Graphs of bioclimatic ranges of species and climates |
| ensemble.bioclim.object | Suitability mapping based on the BIOCLIM algorithm |
| ensemble.calibrate.models | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.calibrate.models.gbm | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.calibrate.models.nnet | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.calibrate.weights | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.centroids | Mapping of environmental zones based on the Mahalanobis distance from centroids in environmental space. |
| ensemble.drop1 | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.dummy.variables | Suitability mapping based on ensembles of modelling algorithms: handling of categorical data |
| ensemble.ecocrop | Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
| ensemble.ecocrop.object | Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
| ensemble.formulae | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.habitat.change | Suitability mapping based on ensembles of modelling algorithms: consensus mapping |
| ensemble.mean | Suitability mapping based on ensembles of modelling algorithms: batch processing |
| ensemble.novel | Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
| ensemble.novel.object | Mapping of novel environmental conditions (areas where some of the environmental conditions are outside the range of environmental conditions of a reference area). |
| ensemble.plot | Suitability mapping based on ensembles of modelling algorithms: batch processing |
| ensemble.raster | Suitability mapping based on ensembles of modelling algorithms: consensus mapping |
| ensemble.simplified.categories | Suitability mapping based on ensembles of modelling algorithms: handling of categorical data |
| ensemble.spatialThin | Spatial thinning of presence point locations using the highly accurate geodesic estimates from the geosphere package |
| ensemble.strategy | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.threshold | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.VIF | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.weights | Suitability mapping based on ensembles of modelling algorithms: calibration of models and weights |
| ensemble.zones | Mapping of environmental zones based on the Mahalanobis distance from centroids in environmental space. |
| evaluation.strip.data | Evaluation strips for ensemble suitability mapping |
| evaluation.strip.plot | Evaluation strips for ensemble suitability mapping |
| faramea | Faramea occidentalis abundance in Panama |
| ifri | Example data from the International Forestry Resources and Institutions (IFRI) research network |
| import.from.Access | Synchronize Community and Environmental Datasets |
| import.from.Access2007 | Synchronize Community and Environmental Datasets |
| import.from.Excel | Synchronize Community and Environmental Datasets |
| import.from.Excel2007 | Synchronize Community and Environmental Datasets |
| importancevalue | Importance Value |
| importancevalue.comp | Importance Value |
| loaded.citations | Give Citation Information for all Loaded Packages |
| makecommunitydataset | Make a Community Dataset from a Stacked Dataset |
| multiconstrained | Pairwise Comparisons for All Levels of a Categorical Variable by RDA, CCA or Capscale |
| nested.anova.dbrda | Nested Analysis of Variance via Distance-based Redundancy Analysis or Non-parametric Multivariate Analysis of Variance |
| nested.npmanova | Nested Analysis of Variance via Distance-based Redundancy Analysis or Non-parametric Multivariate Analysis of Variance |
| NMSrandom | Calculate the NMS Result with the Smallest Stress from Various Random Starts |
| nnetrandom | Calculate the NNET Result with the Smallest Value from Various Random Starts |
| ordibubble | Add Other Graphical Items to Ordination Diagrams |
| ordicluster2 | Add Other Graphical Items to Ordination Diagrams |
| ordicoeno | Coenoclines for an Ordination Axis |
| ordiequilibriumcircle | PCA Significance |
| ordinearest | Add Other Graphical Items to Ordination Diagrams |
| ordisymbol | Add Other Graphical Items to Ordination Diagrams |
| ordivector | Add Other Graphical Items to Ordination Diagrams |
| PCAsignificance | PCA Significance |
| prepare.bioenv | Distance Matrix Evaluation |
| radfitresult | Alternative Rank Abundance Fitting Results |
| rankabuncomp | Rank Abundance Curves |
| rankabundance | Rank Abundance Curves |
| rankabunplot | Rank Abundance Curves |
| removeNAcomm | Synchronize Community and Environmental Datasets |
| removeNAenv | Synchronize Community and Environmental Datasets |
| removezerospecies | Synchronize Community and Environmental Datasets |
| renyiaccumresult | Alternative Renyi Diversity Results |
| renyicomp | Alternative Renyi Diversity Results |
| renyiplot | Alternative Renyi Diversity Results |
| renyiresult | Alternative Renyi Diversity Results |
| replaceNAcomm | Synchronize Community and Environmental Datasets |
| residualssurface | Show and Interpolate Two Dimensional Distribution of Residuals |
| same.sites | Synchronize Community and Environmental Datasets |
| spatialsample | Spatial Sampling within a Polygon |
| stackcommunitydataset | Make a Community Dataset from a Stacked Dataset |
| subsetcomm | Synchronize Community and Environmental Datasets |
| transfgradient | Gradient for Hypothetical Example of Turover of Species Composition |
| transfspecies | Hypothetical Example of Turover of Species Composition |
| warcom | Warburgia ugandensis AFLP Scores |
| warenv | Warburgia ugandensis Population Structure |