Hi-C BED File Analysis Pipeline

Documentation for package ‘HBP’ version 0.1.2

calculate_omiccircos_data	output the interaction that our bed interact with ourbed.
calculate_omiccircos_data_solo	help calculate_omiccircos_data to finish its work
check_bed_bin	process the bed file data to bin
choose_chr_bed	choose which chrom from the BED file
circos_plot	Visualization of interactions and tracks
convert_bed_to_matrix	convert the bed file to matrix file for the next analysis
find_bed_to_bed_interaction	find the interaction between specific sites
find_bed_to_bed_interaction_solo	help find_bed_to_bed_interaction finish its work
generate_enzyme_file	generate enzyme file
generate_matrix	generate matrix files
if_distribution_analysis	analyse the interaction frequency distribution
load_all_wig	the function to load wig file
load_bed	the function to load bed file
load_bed_wig	the function to load wig file in the specific sites
load_wig	the function to load tracks
network_analysis	Interaction network topological analysis
run_hicpro	run the hic-pro
statistical_analysis	Statistical significance tests
whitered	generate the color of heatmap