Facilities for Simulating from ODE-Based Models


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Documentation for package ‘RxODE’ version 0.6-1

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A C D E F G M P R S T U W misc

-- A --

add.dosing Add dosing to eventTable
add.sampling Add sampling to eventTable
arrange_ arrange_ for 'solveRxDll' object
arrange_.solveRxDll arrange_ for 'solveRxDll' object

-- C --

coef.RxCompilationManager Return the RxODE coefficients
coef.rxDll Return the RxODE coefficients
coef.RxODE Return the RxODE coefficients
coef.solveRxODE Return the RxODE coefficients

-- D --

distinct_ distinct_ for 'solveRxDll' object
distinct_.solveRxDll distinct_ for 'solveRxDll' object

-- E --

eventTable Create an event table object

-- F --

filter_ filter_ for 'solveRxDll' object
filter_.solveRxDll filter_ for 'solveRxDll' object

-- G --

gather_ gather_ for 'solveRxDll' object
gather_.solveRxDll gather_ for 'solveRxDll' object
genShinyApp.template Generate an example (template) of a dosing regimen shiny app
group_by_ group_by_ for 'solveRxDll' object
group_by_.solveRxDll group_by_ for 'solveRxDll' object

-- M --

mutate_ mutate_ for 'solveRxDll' object
mutate_.solveRxDll mutate_ for 'solveRxDll' object

-- P --

predict.RxODE Predict an RxODE object
print.rxCoefSolve Print the rxCoefSolve object
print.RxCompilationManager Print information about the RxODE object.
print.RxODE Print information about the RxODE object.

-- R --

rename_ rename_ for 'solveRxDll' object
rename_.solveRxDll rename_ for 'solveRxDll' object
rxAddReturn Add a return statment to a function.
rxChain rxChain Chain or add item to solved system of equations
rxClean Cleanup anonymous DLLs
rxCompile Compile a model if needed
rxCompile.character Compile a model if needed
rxCompile.rxDll Compile a model if needed
rxCompile.RxODE Compile a model if needed
rxCoutEcho Echo cout to console for a number
rxDelete Delete the DLL for the model
rxDfdy Jacobain and parameter derivates
rxDllLoaded Determine if the rxDll is loaded or not.
rxInv Invert matrix using Rcpp Armadilo.
rxKahanSum Using the Kahan method, take a more accurate sum
rxLhs Left handed Variables
rxLoad Load the DLL for the object
rxLogifyModel Takes a model and expands it to log multiplication
rxNeumaierSum Using the Neumaier method, take a more accurate sum
rxNorm Get the normalized model
RxODE Create an ODE-based model specification
rxOptions Options for RxODE
rxPairwiseSum Return an accurate floating point sum of values
rxParam Parameters specified by the model
rxParams Parameters specified by the model
rxPermissive Permissive or Strict RxODE sytax options
rxProd Using RxODE's default method, take a product
rxPythonFsum Return an accurate floating point sum of values
rxRmPrint Remove print statements
rxRmSens Remove sensitivity equations
rxRtoolsBaseWin Return Rtools base
rxSetProd Choose the type of product to use in RxODE. These are used in the RxODE 'prod' blocks
rxSetSum Choose the type of sums to use for RxODE.
rxSetupMemoize This setups the memoized functions.
rxSolve Solves a ODE equation
rxSolve.RxODE Solves a ODE equation
rxSolve.solveRxODE Solves a ODE equation
rxState State variables
rxStrict Permissive or Strict RxODE sytax options
rxSum Using RxODE's default method, take a sum
rxSumProdModel Recast model in terms of sum/prod
rxSymDiag Get the theta numbers for the diagonal elements.
rxSymInv Get Omega and Omega^-1 and derivatives
rxSymPyFix Fix SymPy expressions to be R parsable expressions
rxSymPyJacobian Calculate the full Jacobian for a model
rxSymPySensitivity Calculate the sensitivity equations for a model
rxSymPyVersion Return the version of SymPy that is running
rxSyncOptions Sync options with RxODE varaibles
rxTest Validate RxODE
rxTrans Translate the model to C code if needed
rxTrans.character Translate the model to C code if needed
rxTrans.default Translate the model to C code if needed
rxUnload Unload the DLL for the object
rxValidate Validate RxODE
rxWinPythonSetup Setup Python and SymPy for windows
rxWinRtoolsPath Setup Rtools path
rxWinSetup Setup Windows components for RxODE

-- S --

sample_frac sample_frac for 'solveRxDll' object
sample_frac.solveRxDll sample_frac for 'solveRxDll' object
sample_n sample_n for 'solveRxDll' object
sample_n.solveRxDll sample_n for 'solveRxDll' object
select_ select_ for 'solveRxDll' object
select_.solveRxDll select_ for 'solveRxDll' object
separate_ separate_ for 'solveRxDll' object
separate_.solveRxDll separate_ for 'solveRxDll' object
slice_ slice_ for 'solveRxDll' object
slice_.solveRxDll slice_ for 'solveRxDll' object
solve.character Solve RxODE objects
solve.RxCompilationManager Solve RxODE objects
solve.rxDll Solve RxODE objects
solve.RxODE Solve RxODE objects
solve.solveRxDll Solve RxODE objects
spread_ spread_ for 'solveRxDll' object
spread_.solveRxDll spread_ for 'solveRxDll' object
summarise_ summarise_ for 'solveRxDll' object
summarise_.solveRxDll summarise_ for 'solveRxDll' object
summary.RxCompilationManager Print expanded information about the RxODE object.
summary.RxODE Print expanded information about the RxODE object.

-- T --

transmute_ transmute_ for 'solveRxDll' object
transmute_.solveRxDll transmute_ for 'solveRxDll' object

-- U --

unite_ unite_ for 'solveRxDll' object
unite_.solveRxDll unite_ for 'solveRxDll' object
update.solveRxODE Update the solved object with any of the new parameters.

-- W --

write.template.server Generate an example (template) of a dosing regimen shiny app
write.template.ui Generate an example (template) of a dosing regimen shiny app

-- misc --

+.solveRxDll rxChain Chain or add item to solved system of equations