Insertion/Deletion Dynamics for Transposable Elements

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Documentation for package ‘TE’ version 0.1-1

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TE-package TE: Insertion/Deletion Dynamics for Transposable Elements
AetLTR LTR retrotransposons in _Aegilops tauschii_
EstDynamics Estimate TE dynamics using mismatch data
EstDynamics2 Estimate TE dynamics using mismatch data
nbLackOfFitKL Calcualte the KL divergence of a negative binomial fit to the mismatch data.
PlotFamilies Plot the age distributions or insertion rates for multiple families.
print.TEfit Print a TEfit or TEfit2 object
print.TEfit2 Print a TEfit or TEfit2 object
SensitivityPlot Generate sensitivity plots
TE TE: Insertion/Deletion Dynamics for Transposable Elements