Bootstrap Methods for 'ToxCast' High Throughput Screening Data


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Documentation for package ‘toxboot’ version 0.1.1

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dat1000 Bootstrap results for m4id = 9057756 using 1000 replicates
dat10000 Bootstrap results for m4id = 9057756 using 10000 replicates
erl3data Concentration response data from 200 ER assay curves
erl5data Fit parameters, model selection, and hit calls from 200 ER assay curves
gnls_curve Gain Loss Curve.
hill_curve Hill Curve.
listTonumeric Convert x to numeric if x is a list.
nullToNA Replace NULL values with NA.
toxboot Main function to sample, fit, and write results to mongoDB
Toxboot configuration functions Functions for configuring the toxboot package
toxbootConf Functions for configuring the toxboot package
toxbootConfList Functions for configuring the toxboot package
toxbootConfLoad Functions for configuring the toxboot package
toxbootConfReset Functions for configuring the toxboot package
toxbootConfSave Functions for configuring the toxboot package
toxbootConnectMongo Setup connection to toxboot MongoDB
toxbootGetMongoFields Query mongoDB and get requested fields
toxbootGetMySQLFields Function to query toxboot results from MySQL
toxbootGetOpts DEPRECATED
toxbootHitParamCI Performs Hit Call and Model Winner Selection on Bootstrap Results
toxbootmc Filter and multicore wrapper for 'toxboot'
toxbootMongoCount Get number of documents that match query.
toxbootMysqlCreateTable Function to create properly formatted toxboot table in MySQL
toxbootProjectionBuild Build projection for toxboot MongoDB
toxbootQueryBuild Build query for toxboot MongoDB
toxbootQueryToxCast Query ToxCast and format data to pass to 'toxboot'
toxbootReplicates Generates bootstrap samples of dose response data
toxbootSetOpts DEPRECATED
toxbootWriteMongo Write bootstrap results to mongoDB