Last updated on 2018-02-20 08:48:06 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.2 | 12.51 | 104.82 | 117.33 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.2 | 10.96 | 91.15 | 102.11 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.2 | 112.09 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2.2 | 108.30 | WARN | |||
| r-devel-windows-ix86+x86_64 | 2.2 | 32.00 | 155.00 | 187.00 | OK | |
| r-patched-linux-x86_64 | 2.2 | 8.41 | 129.01 | 137.42 | NOTE | |
| r-patched-solaris-x86 | 2.2 | 221.70 | OK | |||
| r-release-linux-x86_64 | 2.2 | 9.42 | 130.30 | 139.72 | NOTE | |
| r-release-windows-ix86+x86_64 | 2.2 | 42.00 | 214.00 | 256.00 | OK | |
| r-release-osx-x86_64 | 2.2 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 2.2 | 39.00 | 191.00 | 230.00 | OK | |
| r-oldrel-osx-x86_64 | 2.2 | OK |
Version: 2.2
Check: compiled code
Result: NOTE
File ‘CNVassoc/libs/CNVassoc.so’:
Found no call to: ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.2
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
‘CGHcall’ ‘CGHregions’ ‘CNVtools’ ‘Biobase’ ‘CGHbase’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 2.2
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘CGHcall’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 2.2
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: CNVassocData
Loading required package: mixdist
Loading required package: mclust
Package 'mclust' version 5.4
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: survival
Loading required package: CGHbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘CGHbase’
Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
chunk 40
Error in .requirePackage(package) :
unable to find required package ‘CGHbase’
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.2
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘CNVassoc_vignette.Rnw’
...
> data(NeveCalled)
> probs <- getProbs(NeveCalled)
Loading required package: CGHbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘CGHbase’
When sourcing ‘CNVassoc_vignette.R’:
Error: unable to find required package ‘CGHbase’
Execution halted
Flavor: r-release-osx-x86_64
Version: 2.2
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Loading required package: CNVassocData
Loading required package: mixdist
Loading required package: mclust
Package 'mclust' version 5.2.3
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: survival
Loading required package: CGHbase
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘CGHbase’
Error: processing vignette 'CNVassoc_vignette.Rnw' failed with diagnostics:
chunk 40
Error in .requirePackage(package) :
unable to find required package ‘CGHbase’
Execution halted
Flavor: r-release-osx-x86_64