Last updated on 2018-02-20 08:48:13 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 3.07 | 86.93 | 90.00 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 2.25 | 78.00 | 80.25 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 83.67 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 81.67 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 1.0.3 | 6.00 | 174.00 | 180.00 | OK | |
| r-patched-linux-x86_64 | 1.0.3 | 2.67 | 108.91 | 111.58 | OK | |
| r-patched-solaris-x86 | 1.0.3 | 444.60 | OK | |||
| r-release-linux-x86_64 | 1.0.3 | 1.97 | 106.62 | 108.59 | OK | |
| r-release-windows-ix86+x86_64 | 1.0.3 | 9.00 | 254.00 | 263.00 | OK | |
| r-release-osx-x86_64 | 1.0.3 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0.3 | 10.00 | 250.00 | 260.00 | OK | |
| r-oldrel-osx-x86_64 | 1.0.3 | OK |
Version: 1.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 1.0.3
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 1.0.3
Check: data for non-ASCII characters
Result: NOTE
Error in .requirePackage(package) :
unable to find required package 'snpStats'
Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 1.0.3
Check: examples
Result: ERROR
Running examples in ‘GenCAT-Ex.R’ failed
The error most likely occurred in:
> ### Name: GenCAT
> ### Title: Running GenCAT
> ### Aliases: GenCAT
> ### Keywords: ~kwd1 ~kwd2
>
> ### ** Examples
>
>
> ###############
> #Running GenCAT
> ###############
> data("CardioMapped")
>
> #Subset CardioMapped to decrease CPU time
> CardioMappedSub<-CardioMapped[CardioMapped$chr < 15,]
> set.seed(1)
> CardioMappedSub<-CardioMappedSub[sample(1:nrow(CardioMappedSub), 100),]
>
> print(head(CardioMappedSub))
SNP effect_allele other_allele testStat chr position class
17232 rs9572807 C T -0.3014771 13 72423959 DACH1
24151 rs4389009 G A -1.4443860 13 99193519 STK24
37178 rs7151730 T A 0.1387317 14 33531585 NPAS3
58941 rs1076958 G A 2.0597766 14 91131857 TTC7B
13089 rs7987481 G A -1.0024210 13 47318950 LRCH1
58302 rs411064 G A 0.2132412 14 90008860 FOXN3
>
> library(snpStats)
Error in library(snpStats) : there is no package called ‘snpStats’
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 1.0.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: ggplot2
Quitting from lines 62-69 (GenCAT-vignette.Rmd)
Error: processing vignette 'GenCAT-vignette.Rmd' failed with diagnostics:
Evaluation error: unable to find required package 'snpStats'.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: ggplot2
Quitting from lines 62-69 (GenCAT-vignette.Rmd)
Error: processing vignette 'GenCAT-vignette.Rmd' failed with diagnostics:
unable to find required package 'snpStats'
Execution halted
Flavor: r-release-osx-x86_64