Last updated on 2018-02-20 08:48:06 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3-1 | 6.37 | 68.47 | 74.84 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.3-1 | 6.07 | 64.05 | 70.12 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.3-1 | 103.29 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3-1 | 101.63 | WARN | |||
| r-devel-windows-ix86+x86_64 | 2.3-1 | 11.00 | 107.00 | 118.00 | NOTE | |
| r-patched-linux-x86_64 | 2.3-1 | 4.79 | 84.02 | 88.81 | NOTE | |
| r-patched-solaris-x86 | 2.3-1 | 154.70 | NOTE | |||
| r-release-linux-x86_64 | 2.3-1 | 3.72 | 84.15 | 87.87 | NOTE | |
| r-release-windows-ix86+x86_64 | 2.3-1 | 12.00 | 148.00 | 160.00 | NOTE | |
| r-release-osx-x86_64 | 2.3-1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 2.3-1 | 12.00 | 116.00 | 128.00 | NOTE | |
| r-oldrel-osx-x86_64 | 2.3-1 | NOTE |
Version: 2.3-1
Check: R code for possible problems
Result: NOTE
approx.bf.p: no visible global function definition for ‘qnorm’
coeff.plot: no visible global function definition for ‘polygon’
coeff.plot: no visible global function definition for ‘abline’
coeff.plot: no visible global function definition for ‘arrows’
coeff.plot: no visible global function definition for ‘points’
coeff.plot: no visible global function definition for ‘segments’
coloc.abf.snpStats: no visible global function definition for
‘single.snp.tests’
coloc.abf.snpStats: no visible global function definition for
‘col.summary’
coloc.bma: no visible global function definition for ‘as.formula’
coloc.bma: no visible global function definition for ‘glm’
coloc.bma: no visible global function definition for ‘coefficients’
coloc.bma : <anonymous>: no visible global function definition for
‘combn’
coloc.bma: no visible global function definition for ‘vcov’
coloc.combine: no visible global function definition for ‘var’
coloc.combine: no visible global function definition for ‘pf’
coloc.combine: no visible global function definition for ‘pchisq’
coloc.test: no visible global function definition for ‘coefficients’
coloc.test: no visible global function definition for ‘vcov’
coloc.test.summary : findmin: no visible global function definition for
‘optimize’
coloc.test.summary: no visible global function definition for
‘integrate’
coloc.test.summary : pv: no visible global function definition for
‘pchisq’
coloc.test.summary : bf.calc: no visible global function definition for
‘integrate’
credible.interval: no visible global function definition for ‘optimize’
credible.interval: no visible global function definition for
‘integrate’
extra.plot: no visible global function definition for ‘axis’
extra.plot: no visible global function definition for ‘box’
extra.plot: no visible global function definition for ‘abline’
fillin: no visible global function definition for ‘col.summary’
fillin: no visible global function definition for ‘snp.imputation’
fillin: no visible global function definition for ‘impute.snps’
pcs.model: no visible global function definition for ‘as.formula’
pcs.model: no visible global function definition for ‘glm’
pcs.model: no visible global function definition for ‘coefficients’
pcs.prepare: no visible global function definition for ‘prcomp’
prepare.df: no visible global function definition for ‘cor’
sdY.est: no visible global function definition for ‘lm’
sdY.est: no visible global function definition for ‘coef’
p.value,coloc: no visible global function definition for ‘pchisq’
plot,colocPCs-missing: no visible binding for global variable ‘object’
plot,colocPCs-missing: no visible global function definition for
‘abline’
Undefined global functions or variables:
abline arrows as.formula axis box coef coefficients col.summary combn
cor glm impute.snps integrate lm object optimize pchisq pf points
polygon prcomp qnorm segments single.snp.tests snp.imputation var
vcov
Consider adding
importFrom("graphics", "abline", "arrows", "axis", "box", "points",
"polygon", "segments")
importFrom("stats", "as.formula", "coef", "coefficients", "cor", "glm",
"integrate", "lm", "optimize", "pchisq", "pf", "prcomp",
"qnorm", "var", "vcov")
importFrom("utils", "combn")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 2.3-1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 2.3-1
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: colorspace
Loading required package: MASS
Loading required package: BMA
Loading required package: survival
Loading required package: leaps
Loading required package: robustbase
Attaching package: ‘robustbase’
The following object is masked from ‘package:survival’:
heart
Loading required package: inline
Loading required package: rrcov
Scalable Robust Estimators with High Breakdown Point (version 1.4-3)
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
chunk 7
Error in library(snpStats) : there is no package called ‘snpStats’
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.3-1
Check: running R code from vignettes
Result: WARN
Errors in running code in vignettes:
when running code in ‘vignette.Rnw’
...
values.against
values.for c(-0.1, 1) c(0.9, 1.1)
c(-0.1, 1) 1.00000 0.05150753
c(0.9, 1.1) 19.41464 1.00000000
> library(snpStats)
When sourcing ‘vignette.R’:
Error: there is no package called ‘snpStats’
Execution halted
Flavor: r-release-osx-x86_64
Version: 2.3-1
Check: re-building of vignette outputs
Result: NOTE
Error in re-building vignettes:
...
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Warning in E1ot$app1 - E0ot$app1 :
Recycling array of length 1 in vector-array arithmetic is deprecated.
Use c() or as.vector() instead.
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
chunk 7
Error in library(snpStats) : there is no package called ‘snpStats’
Execution halted
Flavor: r-release-osx-x86_64