Last updated on 2018-02-20 08:48:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.0 | 3.94 | 47.70 | 51.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.0 | 3.38 | 42.52 | 45.90 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 68.87 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 67.17 | ERROR | |||
| r-devel-windows-ix86+x86_64 | 0.3.0 | 6.00 | 67.00 | 73.00 | OK | |
| r-patched-linux-x86_64 | 0.3.0 | 2.23 | 63.52 | 65.75 | OK | |
| r-patched-solaris-x86 | 0.3.0 | 108.30 | OK | |||
| r-release-linux-x86_64 | 0.3.0 | 2.32 | 64.55 | 66.87 | OK | |
| r-release-windows-ix86+x86_64 | 0.3.0 | 10.00 | 156.00 | 166.00 | OK | |
| r-release-osx-x86_64 | 0.3.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.3.0 | 9.00 | 77.00 | 86.00 | OK | |
| r-oldrel-osx-x86_64 | 0.3.0 | OK |
Version: 0.3.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘preprocessCore’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 0.3.0
Check: examples
Result: ERROR
Running examples in ‘glycanr-Ex.R’ failed
The error most likely occurred in:
> ### Name: quantilenorm
> ### Title: Quantile Normalization of glycan data
> ### Aliases: quantilenorm
>
> ### ** Examples
>
> data(mpiu)
> mpiun <- quantilenorm(mpiu)
Error in quantilenorm(mpiu) :
Unable to proceed since package preprocessCore from
BioConductor is not available on this system. This
package is a prerequisite to use the quantilenorm function!
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-osx-x86_64
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(glycanr)
From version 0.3 functions tanorm and glyco.outliers expect data frames
in long format.
>
> test_check("glycanr")
── 1. Error: (unknown) (@test_normalization.R#152) ────────────────────────────
Unable to proceed since package preprocessCore from
BioConductor is not available on this system. This
package is a prerequisite to use the quantilenorm function!
1: quantilenorm(mpiu, transpose = TRUE) at testthat/test_normalization.R:152
2: stop("Unable to proceed since package preprocessCore from\n BioConductor is not available on this system. This\n package is a prerequisite to use the quantilenorm function!")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 5 SKIPPED: 0 FAILED: 1
1. Error: (unknown) (@test_normalization.R#152)
Error: testthat unit tests failed
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Error in quantilenorm(mpiu, transpose = TRUE) :
Unable to proceed since package preprocessCore from
BioConductor is not available on this system. This
package is a prerequisite to use the quantilenorm function!
Calls: test_check ... force -> source_file -> eval -> eval -> quantilenorm
testthat results ================================================================
OK: 5 SKIPPED: 0 FAILED: 0
Execution halted
Flavor: r-release-osx-x86_64