CRAN Package Check Results for Package kobe

Last updated on 2018-02-21 14:49:45 CET.

Check Details

Version: 1.3.2
Check: R code for possible problems
Result: NOTE
    getBSP: no visible global function definition for ‘read.csv’
    io2box : <anonymous>: no visible global function definition for
     ‘quantile’
    io2box : <anonymous>: no visible global function definition for
     ‘median’
    ioAspic : <anonymous>: no visible global function definition for
     ‘quantile’
    ioAspic : <anonymous>: no visible global function definition for
     ‘median’
    ioBsp : <anonymous>: no visible global function definition for
     ‘quantile’
    ioBsp : <anonymous>: no visible global function definition for ‘median’
    ioMFCL : <anonymous>: no visible global function definition for
     ‘quantile’
    ioMFCL : <anonymous>: no visible global function definition for
     ‘median’
    ioSS: no visible global function definition for ‘read.csv’
    ioSS : <anonymous>: no visible global function definition for
     ‘quantile’
    ioSS : <anonymous>: no visible global function definition for ‘median’
    ioSS3: no visible global function definition for ‘read.csv’
    ioSS3 : <anonymous>: no visible global function definition for
     ‘quantile’
    ioSS3 : <anonymous>: no visible global function definition for ‘median’
    kobeInterp: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar: no visible global function definition for ‘grey’
    kobePhaseMar : <anonymous>: no visible global function definition for
     ‘median’
    kobePhaseMar2: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar2: no visible global function definition for ‘grey’
    kobePhaseMar2 : <anonymous>: no visible global function definition for
     ‘median’
    kobePhaseMar3: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar3: no visible global function definition for ‘grey’
    kobePhaseMar3 : <anonymous>: no visible global function definition for
     ‘median’
    kobeTrksFn: no visible binding for global variable ‘quantile’
    readKobe2box: no visible global function definition for ‘read.table’
    readSam: no visible global function definition for ‘read.table’
    theme_ms: possible error in theme(axis.text = element_text(size =
     rel(0.8)), axis.ticks = element_line(colour = "black"), legend.key =
     element_rect(colour = "grey80"), panel.background = element_rect(fill
     = "white", colour = NA), panel.border = element_rect(fill = NA,
     colour = "grey50"), panel.grid.major = element_line(colour =
     "grey90", size = 0.2), panel.grid.minor = element_line(colour =
     "grey98", size = 0.5), strip.background = element_rect(fill =
     "grey80", colour = "grey50"), strip.background = element_rect(fill =
     "grey80", : formal argument "strip.background" matched by multiple
     actual arguments
    theme_ms: possible error in colour = "grey50")): formal argument
     "strip.background" matched by multiple actual arguments
    theme_ms: no visible global function definition for ‘modifyList’
    kobe2sm,data.frame: no visible global function definition for
     ‘colorRampPalette’
    kobe2sm,data.frame: no visible global function definition for ‘par’
    kobe2sm,data.frame: no visible global function definition for
     ‘kobe2smFn’
    kobe2sm,data.frame: no visible global function definition for ‘mtext’
    kobe,data.frame-missing : <anonymous>: no visible global function
     definition for ‘kobeFn’
    Undefined global functions or variables:
     colorRampPalette grey kobe2smFn kobeFn median modifyList mtext par
     quantile read.csv read.table
    Consider adding
     importFrom("grDevices", "colorRampPalette", "grey")
     importFrom("graphics", "mtext", "par")
     importFrom("stats", "median", "quantile")
     importFrom("utils", "modifyList", "read.csv", "read.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'theme(axis.text = element_text(size = rel(0.8)), ': formal argument "strip.background" matched by multiple actual arguments
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.3.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
     rename, round_any
    
    Warning: Removed 27 rows containing missing values (geom_path).
    Scale for 'y' is already present. Adding another scale for 'y', which will
    replace the existing scale.
    Scale for 'x' is already present. Adding another scale for 'x', which will
    replace the existing scale.
    Warning: Removed 8 rows containing missing values (geom_point).
    Warning: Removed 8 rows containing missing values (geom_point).
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'kobe.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `framed.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.24 \usepackage
     {color}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.3.2
Check: R code for possible problems
Result: NOTE
    getBSP: no visible global function definition for ‘read.csv’
    io2box : <anonymous>: no visible global function definition for
     ‘quantile’
    io2box : <anonymous>: no visible global function definition for
     ‘median’
    ioAspic : <anonymous>: no visible global function definition for
     ‘quantile’
    ioAspic : <anonymous>: no visible global function definition for
     ‘median’
    ioBsp : <anonymous>: no visible global function definition for
     ‘quantile’
    ioBsp : <anonymous>: no visible global function definition for ‘median’
    ioMFCL : <anonymous>: no visible global function definition for
     ‘quantile’
    ioMFCL : <anonymous>: no visible global function definition for
     ‘median’
    ioSS: no visible global function definition for ‘read.csv’
    ioSS : <anonymous>: no visible global function definition for
     ‘quantile’
    ioSS : <anonymous>: no visible global function definition for ‘median’
    ioSS3: no visible global function definition for ‘read.csv’
    ioSS3 : <anonymous>: no visible global function definition for
     ‘quantile’
    ioSS3 : <anonymous>: no visible global function definition for ‘median’
    kobeInterp: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar: no visible global function definition for ‘grey’
    kobePhaseMar : <anonymous>: no visible global function definition for
     ‘median’
    kobePhaseMar2: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar2: no visible global function definition for ‘grey’
    kobePhaseMar2 : <anonymous>: no visible global function definition for
     ‘median’
    kobePhaseMar3: no visible global function definition for
     ‘colorRampPalette’
    kobePhaseMar3: no visible global function definition for ‘grey’
    kobePhaseMar3 : <anonymous>: no visible global function definition for
     ‘median’
    kobeTrksFn: no visible binding for global variable ‘quantile’
    readKobe2box: no visible global function definition for ‘read.table’
    readSam: no visible global function definition for ‘read.table’
    theme_ms: no visible global function definition for ‘modifyList’
    kobe2sm,data.frame: no visible global function definition for
     ‘colorRampPalette’
    kobe2sm,data.frame: no visible global function definition for ‘par’
    kobe2sm,data.frame: no visible global function definition for
     ‘kobe2smFn’
    kobe2sm,data.frame: no visible global function definition for ‘mtext’
    kobe,data.frame-missing : <anonymous>: no visible global function
     definition for ‘kobeFn’
    Undefined global functions or variables:
     colorRampPalette grey kobe2smFn kobeFn median modifyList mtext par
     quantile read.csv read.table
    Consider adding
     importFrom("grDevices", "colorRampPalette", "grey")
     importFrom("graphics", "mtext", "par")
     importFrom("stats", "median", "quantile")
     importFrom("utils", "modifyList", "read.csv", "read.table")
    to your NAMESPACE file.
Flavor: r-oldrel-osx-x86_64