CRAN Package Check Results for Package SAGA

Last updated on 2018-03-05 09:47:44 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0.0 2.21 35.60 37.81 ERROR
r-devel-linux-x86_64-debian-gcc 2.0.0 2.23 31.38 33.61 ERROR
r-devel-linux-x86_64-fedora-clang 2.0.0 50.83 ERROR
r-devel-linux-x86_64-fedora-gcc 2.0.0 50.51 ERROR
r-devel-windows-ix86+x86_64 2.0.0 9.00 56.00 65.00 ERROR
r-patched-linux-x86_64 2.0.0 1.40 77.41 78.81 OK
r-patched-solaris-x86 2.0.0 103.70 OK
r-release-linux-x86_64 2.0.0 1.89 77.75 79.64 OK
r-release-windows-ix86+x86_64 2.0.0 8.00 121.00 129.00 OK
r-release-osx-x86_64 2.0.0 OK
r-oldrel-windows-ix86+x86_64 2.0.0 5.00 81.00 86.00 OK
r-oldrel-osx-x86_64 2.0.0 OK

Check Details

Version: 2.0.0
Check: examples
Result: ERROR
    Running examples in ‘SAGA-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: plot
    > ### Title: provides a custom plot of a genarch object
    > ### Aliases: plot.genarch
    >
    > ### ** Examples
    >
    > data(PH)
    > results <- AnalyzeCrossesMM(PH)
    The following composite effects cannot be estimated with the line
    means available because they estimate identical quantities to
    lower order effects:
    CaAd
    
    The composite genetic effects that will be tested are:
     Aa, Ad, Ca, Mea, Med, AaAa, AaAd, AdAd, CaAa
    
    Generating Models....
     50
     100
     150
     200
     250
    26 models were removed due to high covariances
    or linear relationships between predictor variables.
    The remaining 229 models have been evaluated.
    
    
    AICc weights were used to select the minimum number of models whose weights sum
    to greater than 95% this model set includes 12 model(s)
    > plot(results)
    Error in if (maxval < 0) maxval <- 0 :
     missing value where TRUE/FALSE needed
    Calls: plot -> plot.genarch
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Quitting from lines 267-270 (model-averaged-analysis.Rmd)
    Error: processing vignette ‘model-averaged-analysis.Rmd’ failed with diagnostics:
    missing value where TRUE/FALSE needed
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0.0
Check: examples
Result: ERROR
    Running examples in ‘SAGA-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot
    > ### Title: provides a custom plot of a genarch object
    > ### Aliases: plot.genarch
    >
    > ### ** Examples
    >
    > data(PH)
    > results <- AnalyzeCrossesMM(PH)
    The following composite effects cannot be estimated with the line
    means available because they estimate identical quantities to
    lower order effects:
    CaAd
    
    The composite genetic effects that will be tested are:
     Aa, Ad, Ca, Mea, Med, AaAa, AaAd, AdAd, CaAa
    
    Generating Models....
     50
     100
     150
     200
     250
    26 models were removed due to high covariances
    or linear relationships between predictor variables.
    The remaining 229 models have been evaluated.
    
    
    AICc weights were used to select the minimum number of models whose weights sum
    to greater than 95% this model set includes 12 model(s)
    > plot(results)
    Error in if (maxval < 0) maxval <- 0 :
     missing value where TRUE/FALSE needed
    Calls: plot -> plot.genarch
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64