CRAN Package Check Results for Package issueReporter

Last updated on 2018-03-05 09:47:29 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 1.39 20.74 22.13 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.0 0.80 17.72 18.52 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.0 32.18 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.0 30.41 ERROR
r-devel-windows-ix86+x86_64 0.1.0 4.00 69.00 73.00 OK
r-patched-linux-x86_64 0.1.0 1.32 22.92 24.24 ERROR
r-patched-solaris-x86 0.1.0 40.20 ERROR
r-release-linux-x86_64 0.1.0 1.06 23.17 24.23 ERROR
r-release-windows-ix86+x86_64 0.1.0 5.00 58.00 63.00 OK
r-release-osx-x86_64 0.1.0 ERROR
r-oldrel-windows-ix86+x86_64 0.1.0 3.00 37.00 40.00 OK
r-oldrel-osx-x86_64 0.1.0 ERROR

Check Details

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘test.R’ [1s/1s]
    Running the tests in ‘tests/test.R’ failed.
    Complete output:
     > # Use the default data to avoid token requirement for testing purposes
     > # Generate markdown text string
     > library(issueReporter)
     > setwd(tempdir())
     >
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
    
    
     processing file: tint.Rmd
     inline R code fragments
    
     label: setup (with options)
     List of 1
     $ include: logi FALSE
    
     ordinary text without R code
    
     label: unnamed-chunk-1 (with options)
     List of 2
     $ results: chr "asis"
     $ echo : logi FALSE
    
     ordinary text without R code
    
     Error in file(con, "w") : cannot open the connection
     Calls: issuesGenPDF -> <Anonymous> -> <Anonymous> -> writeLines -> file
     In addition: Warning messages:
     1: In block_exec(params) : failed to tidy R code in chunk <setup>
     reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
     2: In file(con, "w") :
     cannot open file 'tint.knit.md': Read-only file system
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘test.R’ [1s/2s]
    Running the tests in ‘tests/test.R’ failed.
    Complete output:
     > # Use the default data to avoid token requirement for testing purposes
     > # Generate markdown text string
     > library(issueReporter)
     > setwd(tempdir())
     >
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
    
    
     processing file: tint.Rmd
     inline R code fragments
    
     label: setup (with options)
     List of 1
     $ include: logi FALSE
    
     ordinary text without R code
    
     label: unnamed-chunk-1 (with options)
     List of 2
     $ results: chr "asis"
     $ echo : logi FALSE
    
     ordinary text without R code
    
     Error in file(con, "w") : cannot open the connection
     Calls: issuesGenPDF -> <Anonymous> -> <Anonymous> -> writeLines -> file
     In addition: Warning messages:
     1: In block_exec(params) : failed to tidy R code in chunk <setup>
     reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
     2: In file(con, "w") :
     cannot open file 'tint.knit.md': Read-only file system
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘test.R’
    Running the tests in ‘tests/test.R’ failed.
    Complete output:
     > # Use the default data to avoid token requirement for testing purposes
     > # Generate markdown text string
     > library(issueReporter)
     > setwd(tempdir())
     >
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
    
    
     processing file: tint.Rmd
     inline R code fragments
    
     label: setup (with options)
     List of 1
     $ include: logi FALSE
    
     ordinary text without R code
    
     label: unnamed-chunk-1 (with options)
     List of 2
     $ results: chr "asis"
     $ echo : logi FALSE
    
     ordinary text without R code
    
     output file: tint.knit.md
    
     /usr/local/bin/pandoc +RTS -K512m -RTS tint.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output /tmp/Rtmp1UV1LF/irbf4c1dfa0791.tex --template /data/gannet/ripley/R/test-clang/tint/rmarkdown/templates/pdf/resources/tintPdf-template.tex --highlight-style pygments --latex-engine pdflatex --natbib --variable 'documentclass:tufte-handout'
     You are recommended to install the tinytex package to build PDF.FALSE
     Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
     Rule 'pdflatex': File changes, etc:
     Changed files, or newly in use since previous run(s):
     'irbf4c1dfa0791.aux'
     ------------
     Run number 1 of rule 'pdflatex'
     ------------
     ------------
     Running 'pdflatex -halt-on-error -interaction=batchmode -recorder "/tmp/Rtmp1UV1LF/irbf4c1dfa0791.tex"'
     ------------
     Latexmk: applying rule 'pdflatex'...
     This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
     restricted \write18 enabled.
     entering extended mode
     Latexmk: Found input bbl file 'irbf4c1dfa0791.bbl'
     Latexmk: Log file says output to 'irbf4c1dfa0791.pdf'
     === TeX engine is 'pdfTeX'
     Latexmk: All targets (irbf4c1dfa0791.pdf) are up-to-date
     Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
    
     Latexmk: No file name specified, and I couldn't find any
     Use
     latexmk -help
     to get usage information
    
     Output created: irbf4c1dfa0791.pdf
     Error in tools::file_path_as_absolute(output_file) :
     file '/tmp/Rtmp1UV1LF/irbf4c1dfa0791.pdf' does not exist
     Calls: issuesGenPDF -> <Anonymous> -> <Anonymous>
     In addition: Warning messages:
     1: In block_exec(params) : failed to tidy R code in chunk <setup>
     reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
     2: In file.rename(file_with_ext(texfile, "pdf"), output_file) :
     cannot rename file '/tmp/Rtmp1UV1LF/irbf4c1dfa0791.pdf' to '/tmp/Rtmp1UV1LF/irbf4c1dfa0791.pdf', reason 'No such file or directory'
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘test.R’
    Running the tests in ‘tests/test.R’ failed.
    Complete output:
     > # Use the default data to avoid token requirement for testing purposes
     > # Generate markdown text string
     > library(issueReporter)
     > setwd(tempdir())
     >
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
    
    
     processing file: tint.Rmd
     inline R code fragments
    
     label: setup (with options)
     List of 1
     $ include: logi FALSE
    
     ordinary text without R code
    
     label: unnamed-chunk-1 (with options)
     List of 2
     $ results: chr "asis"
     $ echo : logi FALSE
    
     ordinary text without R code
    
     output file: tint.knit.md
    
     /usr/local/bin/pandoc +RTS -K512m -RTS tint.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output /tmp/RtmpFKfLag/ir46782c75937d.tex --template /data/gannet/ripley/R/test-3.5/tint/rmarkdown/templates/pdf/resources/tintPdf-template.tex --highlight-style pygments --latex-engine pdflatex --natbib --variable 'documentclass:tufte-handout'
     You are recommended to install the tinytex package to build PDF.FALSE
     Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
     Rule 'pdflatex': File changes, etc:
     Changed files, or newly in use since previous run(s):
     'ir46782c75937d.aux'
     ------------
     Run number 1 of rule 'pdflatex'
     ------------
     ------------
     Running 'pdflatex -halt-on-error -interaction=batchmode -recorder "/tmp/RtmpFKfLag/ir46782c75937d.tex"'
     ------------
     Latexmk: applying rule 'pdflatex'...
     This is pdfTeX, Version 3.14159265-2.6-1.40.18 (TeX Live 2017) (preloaded format=pdflatex)
     restricted \write18 enabled.
     entering extended mode
     Latexmk: Found input bbl file 'ir46782c75937d.bbl'
     Latexmk: Log file says output to 'ir46782c75937d.pdf'
     === TeX engine is 'pdfTeX'
     Latexmk: All targets (ir46782c75937d.pdf) are up-to-date
     Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
    
     Latexmk: No file name specified, and I couldn't find any
     Use
     latexmk -help
     to get usage information
    
     Output created: ir46782c75937d.pdf
     Error in tools::file_path_as_absolute(output_file) :
     file '/tmp/RtmpFKfLag/ir46782c75937d.pdf' does not exist
     Calls: issuesGenPDF -> <Anonymous> -> <Anonymous>
     In addition: Warning messages:
     1: In block_exec(params) : failed to tidy R code in chunk <setup>
     reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
     2: In file.rename(file_with_ext(texfile, "pdf"), output_file) :
     cannot rename file '/tmp/RtmpFKfLag/ir46782c75937d.pdf' to '/tmp/RtmpFKfLag/ir46782c75937d.pdf', reason 'No such file or directory'
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘test.R’ [2s/3s]
    Running the tests in ‘tests/test.R’ failed.
    Complete output:
     > # Use the default data to avoid token requirement for testing purposes
     > # Generate markdown text string
     > library(issueReporter)
     > setwd(tempdir())
     >
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
    
    
     processing file: tint.Rmd
     inline R code fragments
    
     label: setup (with options)
     List of 1
     $ include: logi FALSE
    
     ordinary text without R code
    
     label: unnamed-chunk-1 (with options)
     List of 2
     $ results: chr "asis"
     $ echo : logi FALSE
    
     ordinary text without R code
    
     Error in file(con, "w") : cannot open the connection
     Calls: issuesGenPDF -> <Anonymous> -> <Anonymous> -> writeLines -> file
     In addition: Warning messages:
     1: In block_exec(params) : failed to tidy R code in chunk <setup>
     reason: Error in loadNamespace(name) : there is no package called 'formatR'
    
     2: In file(con, "w") :
     cannot open file 'tint.knit.md': Read-only file system
     Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘test.R’
    Running the tests in ‘tests/test.R’ failed.
    Complete output:
     > # Use the default data to avoid token requirement for testing purposes
     > # Generate markdown text string
     > library(issueReporter)
     > setwd(tempdir())
     >
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
     Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.1.0
Check: tests
Result: ERROR
     Running ‘test.R’ [1s/1s]
    Running the tests in ‘tests/test.R’ failed.
    Last 13 lines of output:
     > setwd(tempdir())
     >
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
     Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
     Execution halted
Flavor: r-release-osx-x86_64

Version: 0.1.0
Check: tests
Result: ERROR
    Running the tests in ‘tests/test.R’ failed.
    Last 13 lines of output:
     > testMD <- issuesData2md()
     >
     > # Use default data to generate PDF
     > issuesGenPDF(style = "tint",
     + RmdLocation = system.file("rmarkdown/templates/", "tint.Rmd",
     + package = "issueReporter"),
     + outputFile = tempfile(pattern="ir", fileext=".pdf"),
     + outputDir = tempdir(),
     + md = testMD,
     + setTitle = "Example Notes",
     + setAuthor = "Author Name")
     Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available).
     Execution halted
Flavor: r-oldrel-osx-x86_64