CRAN Package Check Results for Package GeneFeST

Last updated on 2018-03-19 19:54:08 CET.

Additional issues

rchk

Check Details

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/GeneFeST.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.1
Check: R code for possible problems
Result: NOTE
    GeneFeST: no visible global function definition for ‘read.table’
    GeneFeST: no visible global function definition for ‘rnorm’
    GeneFeST: no visible global function definition for ‘as.mcmc’
    GeneFeST: no visible global function definition for ‘dnorm’
    GeneFeST: no visible global function definition for ‘sd’
    X_jump_model_codominant: no visible global function definition for
     ‘rnorm’
    X_jump_model_codominant: no visible global function definition for
     ‘dnorm’
    X_jump_model_codominant: no visible global function definition for
     ‘write.table’
    X_jump_model_codominant: no visible global function definition for
     ‘runif’
    X_jump_model_codominant2: no visible global function definition for
     ‘rnorm’
    X_jump_model_codominant2: no visible global function definition for
     ‘write.table’
    X_jump_model_codominant2: no visible global function definition for
     ‘runif’
    X_jump_model_codominant3: no visible global function definition for
     ‘rnorm’
    X_jump_model_codominant3: no visible global function definition for
     ‘write.table’
    X_jump_model_codominant3: no visible global function definition for
     ‘runif’
    X_update_d_alphaco_i: no visible global function definition for ‘rnorm’
    X_update_d_alphaco_i: no visible global function definition for ‘runif’
    X_update_d_alphaco_i_new: no visible global function definition for
     ‘rnorm’
    X_update_d_alphaco_i_new: no visible global function definition for
     ‘runif’
    X_update_d_alphaco_i_new2: no visible global function definition for
     ‘rnorm’
    X_update_d_alphaco_i_new2: no visible global function definition for
     ‘runif’
    X_update_d_alphaco_i_new3: no visible global function definition for
     ‘rnorm’
    X_update_d_alphaco_i_new3: no visible global function definition for
     ‘runif’
    X_update_d_alphaco_i_new_id: no visible global function definition for
     ‘rnorm’
    X_update_d_alphaco_i_new_id: no visible global function definition for
     ‘runif’
    my_rdirichlet: no visible global function definition for ‘rgamma’
    update_d_betaco: no visible global function definition for ‘rnorm’
    update_d_betaco: no visible global function definition for ‘runif’
    update_freq_codominant: no visible global function definition for
     ‘runif’
    Undefined global functions or variables:
     as.mcmc dnorm read.table rgamma rnorm runif sd write.table
    Consider adding
     importFrom("stats", "dnorm", "rgamma", "rnorm", "runif", "sd")
     importFrom("utils", "read.table", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0.1
Check: compiled code
Result: NOTE
    File ‘GeneFeST/libs/GeneFeST.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/GeneFeST.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/data/gannet/ripley/R/packages/tests-clang/GeneFeST.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See ‘/data/gannet/ripley/R/packages/tests-devel/GeneFeST.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: break used in wrong context: no loop is visible
    See 'd:/Rcompile/CRANpkg/local/3.5/GeneFeST.Rcheck/00install.out' for details.
    Information on the location(s) of code generating the 'Note's can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to 'yes'.
Flavor: r-devel-windows-ix86+x86_64