CRAN Package Check Results for Package ppiPre

Last updated on 2018-04-05 16:50:44 CEST.

Check Details

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘org.Ag.eg.db’ ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’
     ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’
     ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’
     ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See ‘/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/ppiPre.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.9
Check: R code for possible problems
Result: NOTE
    ComputeAllEvidences: possible error in
     geneSim(as.character(Sims[[1]][i]), as.character(Sims[[2]][i]), ont =
     "BP", organism = wh_organism, measure = "Wang", drop <- dropcodes):
     unused arguments (ont = "BP", organism = wh_organism)
    ComputeAllEvidences: possible error in
     geneSim(as.character(Sims[[1]][i]), as.character(Sims[[2]][i]), ont =
     "MF", organism = wh_organism, measure = "Wang", drop <- dropcodes):
     unused arguments (ont = "MF", organism = wh_organism)
    ComputeAllEvidences: possible error in
     geneSim(as.character(Sims[[1]][i]), as.character(Sims[[2]][i]), ont =
     "CC", organism = wh_organism, measure = "Wang", drop <- dropcodes):
     unused arguments (ont = "CC", organism = wh_organism)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-devel-osx-x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ppiPre.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See ‘/data/gannet/ripley/R/packages/tests-clang/ppiPre.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See ‘/data/gannet/ripley/R/packages/tests-devel/ppiPre.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     'org.EcSakai.eg.db' 'org.Pf.plasmo.db'
Flavor: r-devel-windows-ix86+x86_64

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See 'd:/Rcompile/CRANpkg/local/3.5/ppiPre.Rcheck/00install.out' for details.
    Information on the location(s) of code generating the 'Note's can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to 'yes'.
Flavor: r-devel-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     ‘KEGG.db’ ‘org.Sc.sgd.db’ ‘org.Ag.eg.db’ ‘org.Pt.eg.db’
     ‘org.Rn.eg.db’ ‘org.Ss.eg.db’ ‘org.At.tair.db’ ‘org.Bt.eg.db’
     ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’ ‘org.Dr.eg.db’
     ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’ ‘org.Mm.eg.db’
     ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
Flavor: r-devel-osx-x86_64

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See ‘/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.5/ppiPre.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-devel-osx-x86_64

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/ppiPre.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-patched-linux-x86_64

Version: 1.9
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "BP", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "MF", organism = wh_organism)
     Note: possible error in 'geneSim(as.character(Sims[[1]][i]), ': unused arguments (ont = "CC", organism = wh_organism)
    See ‘/home/ripley/R/packages/tests32/ppiPre.Rcheck/00install.out’ for details.
    Information on the location(s) of code generating the ‘Note’s can be
    obtained by re-running with environment variable R_KEEP_PKG_SOURCE set
    to ‘yes’.
Flavor: r-patched-solaris-x86

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     'org.Ag.eg.db' 'org.Pt.eg.db' 'org.Rn.eg.db' 'org.Ss.eg.db'
     'org.Bt.eg.db' 'org.Ce.eg.db' 'org.Cf.eg.db' 'org.Dr.eg.db'
     'org.EcK12.eg.db' 'org.EcSakai.eg.db' 'org.Gg.eg.db' 'org.Mmu.eg.db'
     'org.Pf.plasmo.db' 'org.Xl.eg.db'
Flavor: r-release-windows-ix86+x86_64

Version: 1.9
Check: package dependencies
Result: ERROR
    Package required but not available: ‘GO.db’
    
    Packages which this enhances but not available for checking:
     ‘KEGG.db’ ‘org.Hs.eg.db’ ‘org.Sc.sgd.db’ ‘org.Ag.eg.db’
     ‘org.Pt.eg.db’ ‘org.Rn.eg.db’ ‘org.Ss.eg.db’ ‘org.At.tair.db’
     ‘org.Bt.eg.db’ ‘org.Ce.eg.db’ ‘org.Cf.eg.db’ ‘org.Dm.eg.db’
     ‘org.Dr.eg.db’ ‘org.EcK12.eg.db’ ‘org.EcSakai.eg.db’ ‘org.Gg.eg.db’
     ‘org.Mm.eg.db’ ‘org.Mmu.eg.db’ ‘org.Pf.plasmo.db’ ‘org.Xl.eg.db’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.9
Check: package dependencies
Result: NOTE
    Packages which this enhances but not available for checking:
     'org.Ag.eg.db' 'org.Pt.eg.db' 'org.Ss.eg.db' 'org.Bt.eg.db'
     'org.Ce.eg.db' 'org.Cf.eg.db' 'org.Dr.eg.db' 'org.EcK12.eg.db'
     'org.EcSakai.eg.db' 'org.Gg.eg.db' 'org.Mmu.eg.db' 'org.Pf.plasmo.db'
     'org.Xl.eg.db'
Flavor: r-oldrel-windows-ix86+x86_64