Last updated on 2018-05-01 07:48:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7.2 | 21.58 | 158.39 | 179.97 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.7.2 | 18.41 | 139.63 | 158.04 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.7.2 | 254.75 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.7.2 | 252.44 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.7.2 | 55.00 | 286.00 | 341.00 | NOTE | |
| r-patched-linux-x86_64 | 1.7.2 | 20.86 | 154.73 | 175.59 | ERROR | |
| r-patched-solaris-x86 | 1.7.2 | 359.20 | NOTE | |||
| r-release-linux-x86_64 | 1.7.2 | 19.62 | 154.42 | 174.04 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.7.2 | 55.00 | 286.00 | 341.00 | NOTE | |
| r-release-osx-x86_64 | 1.7.2 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.7.2 | 23.00 | 321.00 | 344.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.7.2 | NOTE |
Version: 1.7.2
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
coxDKpls2DR.default coxDKpls2DR.formula coxDKplsDR.default
coxDKplsDR.formula coxDKsplsDR.default coxDKsplsDR.formula
coxpls.default coxpls.formula coxpls2.default coxpls2.formula
coxpls2DR.default coxpls2DR.formula coxpls3.default coxpls3.formula
coxpls3DR.default coxpls3DR.formula coxplsDR.default coxplsDR.formula
coxsplsDR.default coxsplsDR.formula larsDR_coxph.default
larsDR_coxph.formula
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.7.2
Check: R code for possible problems
Result: NOTE
DKplsRcoxmodel.default: no visible global function definition for
‘weighted.mean’
DKplsRcoxmodel.default: no visible binding for global variable
‘weighted.mean’
DKplsRcoxmodel.default: no visible global function definition for
‘as.formula’
DKplsRcoxmodel.default: no visible global function definition for
‘head’
DKplsRcoxmodel.formula: no visible global function definition for
‘model.response’
DKplsRcoxmodel.formula: no visible global function definition for
‘is.empty.model’
DKplsRcoxmodel.formula: no visible global function definition for
‘model.matrix’
DKplsRcoxmodel.formula: no visible binding for global variable
‘contrasts’
DKplsRcoxmodel.formula: no visible global function definition for
‘model.weights’
coxDKpls2DR.default: no visible global function definition for ‘head’
coxDKpls2DR.default: no visible global function definition for
‘as.formula’
coxDKpls2DR.formula: no visible global function definition for
‘model.response’
coxDKpls2DR.formula: no visible global function definition for
‘is.empty.model’
coxDKpls2DR.formula: no visible global function definition for
‘model.matrix’
coxDKpls2DR.formula: no visible binding for global variable ‘contrasts’
coxDKpls2DR.formula: no visible global function definition for
‘model.weights’
coxDKplsDR.default: no visible global function definition for ‘head’
coxDKplsDR.default: no visible global function definition for
‘as.formula’
coxDKplsDR.formula: no visible global function definition for
‘model.response’
coxDKplsDR.formula: no visible global function definition for
‘is.empty.model’
coxDKplsDR.formula: no visible global function definition for
‘model.matrix’
coxDKplsDR.formula: no visible binding for global variable ‘contrasts’
coxDKplsDR.formula: no visible global function definition for
‘model.weights’
coxDKsplsDR.default: no visible global function definition for ‘head’
coxDKsplsDR.default: no visible global function definition for
‘as.formula’
coxDKsplsDR.formula: no visible global function definition for
‘model.response’
coxDKsplsDR.formula: no visible global function definition for
‘is.empty.model’
coxDKsplsDR.formula: no visible global function definition for
‘model.matrix’
coxDKsplsDR.formula: no visible binding for global variable ‘contrasts’
coxDKsplsDR.formula: no visible global function definition for
‘model.weights’
coxpls.default: no visible global function definition for ‘head’
coxpls.default: no visible global function definition for ‘as.formula’
coxpls.formula: no visible global function definition for
‘model.response’
coxpls.formula: no visible global function definition for
‘is.empty.model’
coxpls.formula: no visible global function definition for
‘model.matrix’
coxpls.formula: no visible binding for global variable ‘contrasts’
coxpls.formula: no visible global function definition for
‘model.weights’
coxpls2.default: no visible global function definition for ‘as.formula’
coxpls2.default: no visible global function definition for ‘head’
coxpls2.formula: no visible global function definition for
‘model.response’
coxpls2.formula: no visible global function definition for
‘is.empty.model’
coxpls2.formula: no visible global function definition for
‘model.matrix’
coxpls2.formula: no visible binding for global variable ‘contrasts’
coxpls2.formula: no visible global function definition for
‘model.weights’
coxpls2DR.default: no visible global function definition for ‘head’
coxpls2DR.default: no visible global function definition for
‘as.formula’
coxpls2DR.formula: no visible global function definition for
‘model.response’
coxpls2DR.formula: no visible global function definition for
‘is.empty.model’
coxpls2DR.formula: no visible global function definition for
‘model.matrix’
coxpls2DR.formula: no visible binding for global variable ‘contrasts’
coxpls2DR.formula: no visible global function definition for
‘model.weights’
coxpls3.default: no visible global function definition for ‘head’
coxpls3.default: no visible global function definition for ‘as.formula’
coxpls3.formula: no visible global function definition for
‘model.response’
coxpls3.formula: no visible global function definition for
‘is.empty.model’
coxpls3.formula: no visible global function definition for
‘model.matrix’
coxpls3.formula: no visible binding for global variable ‘contrasts’
coxpls3.formula: no visible global function definition for
‘model.weights’
coxpls3DR.default: no visible global function definition for ‘head’
coxpls3DR.default: no visible global function definition for
‘as.formula’
coxpls3DR.formula: no visible global function definition for
‘model.response’
coxpls3DR.formula: no visible global function definition for
‘is.empty.model’
coxpls3DR.formula: no visible global function definition for
‘model.matrix’
coxpls3DR.formula: no visible binding for global variable ‘contrasts’
coxpls3DR.formula: no visible global function definition for
‘model.weights’
coxplsDR.default: no visible global function definition for ‘head’
coxplsDR.default: no visible global function definition for
‘as.formula’
coxplsDR.formula: no visible global function definition for
‘model.response’
coxplsDR.formula: no visible global function definition for
‘is.empty.model’
coxplsDR.formula: no visible global function definition for
‘model.matrix’
coxplsDR.formula: no visible binding for global variable ‘contrasts’
coxplsDR.formula: no visible global function definition for
‘model.weights’
coxsplsDR.default: no visible global function definition for ‘head’
coxsplsDR.default: no visible global function definition for
‘as.formula’
coxsplsDR.formula: no visible global function definition for
‘model.response’
coxsplsDR.formula: no visible global function definition for
‘is.empty.model’
coxsplsDR.formula: no visible global function definition for
‘model.matrix’
coxsplsDR.formula: no visible binding for global variable ‘contrasts’
coxsplsDR.formula: no visible global function definition for
‘model.weights’
cv.autoplsRcox: no visible binding for global variable ‘var’
cv.autoplsRcox: no visible global function definition for ‘dev.new’
cv.autoplsRcox: no visible global function definition for ‘layout’
cv.autoplsRcox: no visible global function definition for ‘abline’
cv.autoplsRcox: no visible global function definition for ‘axis’
cv.autoplsRcox: no visible global function definition for ‘segments’
cv.coxDKplsDR: no visible binding for global variable ‘var’
cv.coxDKplsDR: no visible global function definition for ‘dev.new’
cv.coxDKplsDR: no visible global function definition for ‘layout’
cv.coxDKplsDR: no visible global function definition for ‘abline’
cv.coxDKplsDR: no visible global function definition for ‘axis’
cv.coxDKplsDR: no visible global function definition for ‘segments’
cv.coxDKsplsDR: no visible binding for global variable ‘var’
cv.coxDKsplsDR: no visible global function definition for ‘dev.new’
cv.coxDKsplsDR: no visible global function definition for ‘layout’
cv.coxDKsplsDR: no visible global function definition for ‘abline’
cv.coxDKsplsDR: no visible global function definition for ‘axis’
cv.coxDKsplsDR: no visible global function definition for ‘segments’
cv.coxpls: no visible binding for global variable ‘var’
cv.coxpls: no visible global function definition for ‘dev.new’
cv.coxpls: no visible global function definition for ‘layout’
cv.coxpls: no visible global function definition for ‘abline’
cv.coxpls: no visible global function definition for ‘axis’
cv.coxpls: no visible global function definition for ‘segments’
cv.coxplsDR: no visible binding for global variable ‘var’
cv.coxplsDR: no visible global function definition for ‘dev.new’
cv.coxplsDR: no visible global function definition for ‘layout’
cv.coxplsDR: no visible global function definition for ‘abline’
cv.coxplsDR: no visible global function definition for ‘axis’
cv.coxplsDR: no visible global function definition for ‘segments’
cv.coxsplsDR: no visible binding for global variable ‘var’
cv.coxsplsDR: no visible global function definition for ‘dev.new’
cv.coxsplsDR: no visible global function definition for ‘layout’
cv.coxsplsDR: no visible global function definition for ‘abline’
cv.coxsplsDR: no visible global function definition for ‘axis’
cv.coxsplsDR: no visible global function definition for ‘segments’
cv.larsDR: no visible global function definition for ‘residuals’
cv.larsDR: no visible binding for global variable ‘var’
cv.larsDR: no visible global function definition for ‘dev.new’
cv.larsDR: no visible global function definition for ‘layout’
cv.larsDR: no visible global function definition for ‘abline’
cv.larsDR: no visible global function definition for ‘axis’
cv.larsDR: no visible global function definition for ‘segments’
cv.plsRcox: no visible binding for global variable ‘var’
cv.plsRcox: no visible global function definition for ‘dev.new’
cv.plsRcox: no visible global function definition for ‘layout’
cv.plsRcox: no visible global function definition for ‘abline’
cv.plsRcox: no visible global function definition for ‘axis’
cv.plsRcox: no visible global function definition for ‘segments’
getIndic: no visible global function definition for ‘var’
getIndic: no visible global function definition for ‘layout’
getIndic: no visible global function definition for ‘abline’
getIndic: no visible global function definition for ‘complete.cases’
getIndicCV: no visible global function definition for ‘layout’
getIndicCV: no visible global function definition for ‘abline’
getIndicCV: no visible global function definition for ‘complete.cases’
getIndicCViAUCSH: no visible global function definition for ‘abline’
getIndicCViAUCSurvROCTest: no visible global function definition for
‘complete.cases’
getIndicCViAUCSurvROCTest: no visible global function definition for
‘abline’
larsDR_coxph.default: no visible global function definition for ‘head’
larsDR_coxph.default: no visible global function definition for
‘as.formula’
larsDR_coxph.formula: no visible global function definition for
‘model.response’
larsDR_coxph.formula: no visible global function definition for
‘is.empty.model’
larsDR_coxph.formula: no visible global function definition for
‘model.matrix’
larsDR_coxph.formula: no visible binding for global variable
‘contrasts’
larsDR_coxph.formula: no visible global function definition for
‘model.weights’
plsRcoxmodel.default: no visible global function definition for
‘weighted.mean’
plsRcoxmodel.default: no visible binding for global variable
‘weighted.mean’
plsRcoxmodel.default: no visible global function definition for ‘head’
plsRcoxmodel.default: no visible global function definition for
‘as.formula’
plsRcoxmodel.default: no visible global function definition for
‘extractAIC’
plsRcoxmodel.default: no visible global function definition for
‘residuals’
plsRcoxmodel.formula: no visible global function definition for
‘model.response’
plsRcoxmodel.formula: no visible global function definition for
‘is.empty.model’
plsRcoxmodel.formula: no visible global function definition for
‘model.matrix’
plsRcoxmodel.formula: no visible binding for global variable
‘contrasts’
plsRcoxmodel.formula: no visible global function definition for
‘model.weights’
predict.plsRcoxmodel: no visible global function definition for
‘is.empty.model’
predict.plsRcoxmodel: no visible global function definition for
‘model.matrix’
predict.plsRcoxmodel: no visible binding for global variable
‘contrasts’
predict.plsRcoxmodel: no visible global function definition for
‘model.weights’
spls.dv: no visible global function definition for ‘median’
spls.dv: no visible global function definition for ‘uniroot’
Undefined global functions or variables:
abline as.formula axis complete.cases contrasts dev.new extractAIC
head is.empty.model layout median model.matrix model.response
model.weights residuals segments uniroot var weighted.mean
Consider adding
importFrom("grDevices", "dev.new")
importFrom("graphics", "abline", "axis", "layout", "segments")
importFrom("stats", "as.formula", "complete.cases", "contrasts",
"extractAIC", "is.empty.model", "median", "model.matrix",
"model.response", "model.weights", "residuals", "uniroot",
"var", "weighted.mean")
importFrom("utils", "head")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.7.2
Check: examples
Result: ERROR
Running examples in ‘plsRcox-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: DKplsRcox
> ### Title: Partial least squares Regression generalized linear models
> ### Aliases: DKplsRcox DKplsRcoxmodel.default DKplsRcoxmodel.formula
> ### Keywords: models regression
>
> ### ** Examples
>
> data(micro.censure)
> data(Xmicro.censure_compl_imp)
>
> X_train_micro <- apply((as.matrix(Xmicro.censure_compl_imp)),FUN="as.numeric",MARGIN=2)[1:80,]
> X_train_micro_df <- data.frame(X_train_micro)
> Y_train_micro <- micro.censure$survyear[1:80]
> C_train_micro <- micro.censure$DC[1:80]
>
> DKplsRcox(X_train_micro,time=Y_train_micro,event=C_train_micro,nt=5)
Error in UseMethod("DKplsRcoxmodel") :
no applicable method for 'DKplsRcoxmodel' applied to an object of class "c('matrix', 'double', 'numeric')"
Calls: DKplsRcox
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64