Last updated on 2018-05-09 22:48:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0 | 5.80 | 47.06 | 52.86 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0 | 4.49 | 36.75 | 41.24 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0 | 392.19 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0 | 383.48 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 2.0 | 8.00 | 443.00 | 451.00 | NOTE | |
| r-patched-linux-x86_64 | 2.0 | 3.80 | 43.58 | 47.38 | ERROR | |
| r-patched-solaris-x86 | 2.0 | 480.60 | NOTE | |||
| r-release-linux-x86_64 | 2.0 | 4.17 | 43.46 | 47.63 | ERROR | |
| r-release-windows-ix86+x86_64 | 2.0 | 8.00 | 443.00 | 451.00 | NOTE | |
| r-release-osx-x86_64 | 2.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 2.0 | 13.00 | 348.00 | 361.00 | NOTE | |
| r-oldrel-osx-x86_64 | 2.0 | NOTE |
Version: 2.0
Check: R code for possible problems
Result: NOTE
BatCINOEDV: no visible global function definition for ‘graphics.off’
CoInformation: no visible global function definition for ‘combn’
CombinationEntropy: no visible global function definition for ‘hist’
ConstructCompleteGraph: no visible global function definition for
‘dev.new’
ConstructCompleteGraph: no visible global function definition for ‘par’
ConstructCompleteGraph: no visible global function definition for
‘plot’
DegreeAnalysis: no visible global function definition for ‘dev.new’
DegreeAnalysis: no visible global function definition for ‘hist’
DegreeAnalysis: no visible global function definition for ‘title’
ExhaustiveSearch: no visible global function definition for ‘combn’
HeatMapFactor: no visible global function definition for ‘dev.new’
InstallPackage: no visible global function definition for
‘install.packages’
NormalizationEffect: no visible global function definition for
‘dev.new’
NormalizationEffect: no visible global function definition for ‘layout’
NormalizationEffect: no visible global function definition for ‘plot’
NormalizationEffect: no visible global function definition for ‘lines’
PSOSearch: no visible global function definition for ‘combn’
PSOSearch: no visible global function definition for ‘runif’
PlotTopEffects: no visible global function definition for ‘dev.new’
PlotTopEffects: no visible global function definition for ‘par’
PlotTopEffects: no visible global function definition for ‘layout’
PlotTopEffects: no visible global function definition for ‘barplot’
PlotTopEffects: no visible global function definition for ‘rainbow’
PlotTopEffects: no visible global function definition for ‘title’
Undefined global functions or variables:
barplot combn dev.new graphics.off hist install.packages layout lines
par plot rainbow runif title
Consider adding
importFrom("grDevices", "dev.new", "graphics.off", "rainbow")
importFrom("graphics", "barplot", "hist", "layout", "lines", "par",
"plot", "title")
importFrom("stats", "runif")
importFrom("utils", "combn", "install.packages")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 2.0
Check: examples
Result: ERROR
Running examples in ‘CINOEDV-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BatCINOEDV
> ### Title: Batch mode for using CINOEDV
> ### Aliases: BatCINOEDV
>
> ### ** Examples
>
> File1 <- system.file("extdata","test.mat",package="CINOEDV")
> File2 <- system.file("extdata","test1.mat",package="CINOEDV")
> File3 <- system.file("extdata","test1_Name.mat",package="CINOEDV")
> FileName <- c(File1,File2)
> SNFName <- c(NA,File3)
> MaxOrder <- 2
> RThreshold <- c(1, 1)
> NThreshold <- c(10, 10)
> measure <- 1
> Stra <- 1
> Pop <- 10
> Iter <- 10
> BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure, Stra, Pop, Iter, SNFName)
The Maximum order : 2
The RatioThreshold : 1 1
The NumberThreshold : 10 10
The input file is : /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CINOEDV/extdata/test.mat
Samples: 4000
Cases: 2000
Controls: 2000
SNPs: 10
The SNP Name File : NA
#### Search Results ####
Please waiting for the search ...
Exhaustive Search !
1-order effect computing ...
elapsed
0.043
2-order effect computing ...
elapsed
0.497
#### Normalization ####
#### SNP Name Notation ####
#### Collect Vertices and Edges ####
#### Construct Complete Graph ####
dev.new(): using pdf(file="Rplots1.pdf")
#### Plot Top Effects ####
dev.new(): using pdf(file="Rplots2.pdf")
#### Degree Analysis ####
dev.new(): using pdf(file="Rplots3.pdf")
SNP Degree
[1,] "5" "4"
[2,] "4" "3"
[3,] "7" "3"
[4,] "10" "3"
[5,] "8" "2"
[6,] "1" "2"
[7,] "6" "2"
[8,] "3" "1"
[9,] "2" "0"
[10,] "9" "0"
#### Split subgraphs ####
dev.new(): using pdf(file="Rplots4.pdf")
[2018-05-08 04:54:15] Exception: No write permission for directory: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CINOEDV/extdata
at #06. getWritablePathname.Arguments(static, ...)
- getWritablePathname.Arguments() is in environment 'R.utils'
at #05. getWritablePathname(static, ...)
- getWritablePathname() is in environment 'R.utils'
at #04. Arguments$getWritablePathname(pathname, mustNotExist = FALSE)
- Arguments$getWritablePathname() is local of the calling function
at #03. writeMat.default(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat.default() is in environment 'R.matlab'
at #02. writeMat(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat() is in environment 'R.matlab'
at #01. BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure,
Stra, Pop, Iter, SNFName)
- BatCINOEDV() is in environment 'CINOEDV'
Error: No write permission for directory: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CINOEDV/extdata
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0
Check: examples
Result: ERROR
Running examples in ‘CINOEDV-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BatCINOEDV
> ### Title: Batch mode for using CINOEDV
> ### Aliases: BatCINOEDV
>
> ### ** Examples
>
> File1 <- system.file("extdata","test.mat",package="CINOEDV")
> File2 <- system.file("extdata","test1.mat",package="CINOEDV")
> File3 <- system.file("extdata","test1_Name.mat",package="CINOEDV")
> FileName <- c(File1,File2)
> SNFName <- c(NA,File3)
> MaxOrder <- 2
> RThreshold <- c(1, 1)
> NThreshold <- c(10, 10)
> measure <- 1
> Stra <- 1
> Pop <- 10
> Iter <- 10
> BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure, Stra, Pop, Iter, SNFName)
The Maximum order : 2
The RatioThreshold : 1 1
The NumberThreshold : 10 10
The input file is : /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/CINOEDV/extdata/test.mat
Samples: 4000
Cases: 2000
Controls: 2000
SNPs: 10
The SNP Name File : NA
#### Search Results ####
Please waiting for the search ...
Exhaustive Search !
1-order effect computing ...
elapsed
0.067
2-order effect computing ...
elapsed
0.467
#### Normalization ####
#### SNP Name Notation ####
#### Collect Vertices and Edges ####
#### Construct Complete Graph ####
dev.new(): using pdf(file="Rplots1.pdf")
#### Plot Top Effects ####
dev.new(): using pdf(file="Rplots2.pdf")
#### Degree Analysis ####
dev.new(): using pdf(file="Rplots3.pdf")
SNP Degree
[1,] "5" "4"
[2,] "4" "3"
[3,] "7" "3"
[4,] "10" "3"
[5,] "8" "2"
[6,] "1" "2"
[7,] "6" "2"
[8,] "3" "1"
[9,] "2" "0"
[10,] "9" "0"
#### Split subgraphs ####
dev.new(): using pdf(file="Rplots4.pdf")
[2018-05-09 16:15:51] Exception: No write permission for directory: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/CINOEDV/extdata
at #06. getWritablePathname.Arguments(static, ...)
- getWritablePathname.Arguments() is in environment 'R.utils'
at #05. getWritablePathname(static, ...)
- getWritablePathname() is in environment 'R.utils'
at #04. Arguments$getWritablePathname(pathname, mustNotExist = FALSE)
- Arguments$getWritablePathname() is local of the calling function
at #03. writeMat.default(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat.default() is in environment 'R.matlab'
at #02. writeMat(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat() is in environment 'R.matlab'
at #01. BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure,
Stra, Pop, Iter, SNFName)
- BatCINOEDV() is in environment 'CINOEDV'
Error: No write permission for directory: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/CINOEDV/extdata
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0
Check: examples
Result: ERROR
Running examples in ‘CINOEDV-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BatCINOEDV
> ### Title: Batch mode for using CINOEDV
> ### Aliases: BatCINOEDV
>
> ### ** Examples
>
> File1 <- system.file("extdata","test.mat",package="CINOEDV")
> File2 <- system.file("extdata","test1.mat",package="CINOEDV")
> File3 <- system.file("extdata","test1_Name.mat",package="CINOEDV")
> FileName <- c(File1,File2)
> SNFName <- c(NA,File3)
> MaxOrder <- 2
> RThreshold <- c(1, 1)
> NThreshold <- c(10, 10)
> measure <- 1
> Stra <- 1
> Pop <- 10
> Iter <- 10
> BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure, Stra, Pop, Iter, SNFName)
The Maximum order : 2
The RatioThreshold : 1 1
The NumberThreshold : 10 10
The input file is : /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CINOEDV/extdata/test.mat
Samples: 4000
Cases: 2000
Controls: 2000
SNPs: 10
The SNP Name File : NA
#### Search Results ####
Please waiting for the search ...
Exhaustive Search !
1-order effect computing ...
elapsed
0.07
2-order effect computing ...
elapsed
0.548
#### Normalization ####
#### SNP Name Notation ####
#### Collect Vertices and Edges ####
#### Construct Complete Graph ####
dev.new(): using pdf(file="Rplots1.pdf")
#### Plot Top Effects ####
dev.new(): using pdf(file="Rplots2.pdf")
#### Degree Analysis ####
dev.new(): using pdf(file="Rplots3.pdf")
SNP Degree
[1,] "5" "4"
[2,] "4" "3"
[3,] "7" "3"
[4,] "10" "3"
[5,] "8" "2"
[6,] "1" "2"
[7,] "6" "2"
[8,] "3" "1"
[9,] "2" "0"
[10,] "9" "0"
#### Split subgraphs ####
dev.new(): using pdf(file="Rplots4.pdf")
[2018-05-08 16:52:44] Exception: No write permission for directory: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CINOEDV/extdata
at #06. getWritablePathname.Arguments(static, ...)
- getWritablePathname.Arguments() is in environment 'R.utils'
at #05. getWritablePathname(static, ...)
- getWritablePathname() is in environment 'R.utils'
at #04. Arguments$getWritablePathname(pathname, mustNotExist = FALSE)
- Arguments$getWritablePathname() is local of the calling function
at #03. writeMat.default(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat.default() is in environment 'R.matlab'
at #02. writeMat(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat() is in environment 'R.matlab'
at #01. BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure,
Stra, Pop, Iter, SNFName)
- BatCINOEDV() is in environment 'CINOEDV'
Error: No write permission for directory: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CINOEDV/extdata
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.0
Check: examples
Result: ERROR
Running examples in ‘CINOEDV-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: BatCINOEDV
> ### Title: Batch mode for using CINOEDV
> ### Aliases: BatCINOEDV
>
> ### ** Examples
>
> File1 <- system.file("extdata","test.mat",package="CINOEDV")
> File2 <- system.file("extdata","test1.mat",package="CINOEDV")
> File3 <- system.file("extdata","test1_Name.mat",package="CINOEDV")
> FileName <- c(File1,File2)
> SNFName <- c(NA,File3)
> MaxOrder <- 2
> RThreshold <- c(1, 1)
> NThreshold <- c(10, 10)
> measure <- 1
> Stra <- 1
> Pop <- 10
> Iter <- 10
> BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure, Stra, Pop, Iter, SNFName)
The Maximum order : 2
The RatioThreshold : 1 1
The NumberThreshold : 10 10
The input file is : /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/CINOEDV/extdata/test.mat
Samples: 4000
Cases: 2000
Controls: 2000
SNPs: 10
The SNP Name File : NA
#### Search Results ####
Please waiting for the search ...
Exhaustive Search !
1-order effect computing ...
elapsed
0.088
2-order effect computing ...
elapsed
1.136
#### Normalization ####
#### SNP Name Notation ####
#### Collect Vertices and Edges ####
#### Construct Complete Graph ####
dev.new(): using pdf(file="Rplots1.pdf")
#### Plot Top Effects ####
dev.new(): using pdf(file="Rplots2.pdf")
#### Degree Analysis ####
dev.new(): using pdf(file="Rplots3.pdf")
SNP Degree
[1,] "5" "4"
[2,] "4" "3"
[3,] "7" "3"
[4,] "10" "3"
[5,] "8" "2"
[6,] "1" "2"
[7,] "6" "2"
[8,] "3" "1"
[9,] "2" "0"
[10,] "9" "0"
#### Split subgraphs ####
dev.new(): using pdf(file="Rplots4.pdf")
[2018-05-09 04:51:53] Exception: No write permission for directory: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/CINOEDV/extdata
at #06. getWritablePathname.Arguments(static, ...)
- getWritablePathname.Arguments() is in environment 'R.utils'
at #05. getWritablePathname(static, ...)
- getWritablePathname() is in environment 'R.utils'
at #04. Arguments$getWritablePathname(pathname, mustNotExist = FALSE)
- Arguments$getWritablePathname() is local of the calling function
at #03. writeMat.default(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat.default() is in environment 'R.matlab'
at #02. writeMat(paste(SaveFileName, ".mat", sep = ""), parameters = parameters,
data = data, results = results, graphs = graphs)
- writeMat() is in environment 'R.matlab'
at #01. BatCINOEDV(FileName, MaxOrder, RThreshold, NThreshold, measure,
Stra, Pop, Iter, SNFName)
- BatCINOEDV() is in environment 'CINOEDV'
Error: No write permission for directory: /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/CINOEDV/extdata
Execution halted
Flavor: r-release-linux-x86_64