CRAN Package Check Results for Package CREAM

Last updated on 2018-05-09 22:48:15 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 1.10 19.05 20.15 ERROR
r-devel-linux-x86_64-debian-gcc 1.1.0 0.93 15.19 16.12 ERROR
r-devel-linux-x86_64-fedora-clang 1.1.0 24.30 OK
r-devel-linux-x86_64-fedora-gcc 1.1.0 22.63 OK
r-devel-windows-ix86+x86_64 1.1.0 3.00 51.00 54.00 OK
r-patched-linux-x86_64 1.1.0 1.13 18.16 19.29 ERROR
r-patched-solaris-x86 1.1.0 39.90 OK
r-release-linux-x86_64 1.1.0 1.21 18.71 19.92 ERROR
r-release-windows-ix86+x86_64 1.1.0 3.00 51.00 54.00 OK
r-release-osx-x86_64 1.1.0 OK
r-oldrel-windows-ix86+x86_64 1.1.0 3.00 36.00 39.00 OK
r-oldrel-osx-x86_64 1.1.0 OK

Check Details

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘CREAM-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: CREAM
    > ### Title: CREAM is the main function for CORE identification
    > ### Aliases: CREAM
    >
    > ### ** Examples
    >
    > CREAM(system.file("extdata", "A549_Chr21.bed", package = "CREAM"),
    + system.file("extdata", "A549_Chr21_COREs.bed", package = "CREAM"),
    + MinLength = 1000, peakNumMin = 2)
    [1] "Please make sure there is no overlap between the input genomic regions. Overlap between the input regions may cause error."
    [1] "Identifying window size for each Order"
    [1] "Identifying COREs"
    [1] "Filtering clusters of low order"
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/CREAM/extdata/A549_Chr21_COREs.bed': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: CREAM -> write.table -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘CREAM-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: CREAM
    > ### Title: CREAM is the main function for CORE identification
    > ### Aliases: CREAM
    >
    > ### ** Examples
    >
    > CREAM(system.file("extdata", "A549_Chr21.bed", package = "CREAM"),
    + system.file("extdata", "A549_Chr21_COREs.bed", package = "CREAM"),
    + MinLength = 1000, peakNumMin = 2)
    [1] "Please make sure there is no overlap between the input genomic regions. Overlap between the input regions may cause error."
    [1] "Identifying window size for each Order"
    [1] "Identifying COREs"
    [1] "Filtering clusters of low order"
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/CREAM/extdata/A549_Chr21_COREs.bed': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: CREAM -> write.table -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘CREAM-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: CREAM
    > ### Title: CREAM is the main function for CORE identification
    > ### Aliases: CREAM
    >
    > ### ** Examples
    >
    > CREAM(system.file("extdata", "A549_Chr21.bed", package = "CREAM"),
    + system.file("extdata", "A549_Chr21_COREs.bed", package = "CREAM"),
    + MinLength = 1000, peakNumMin = 2)
    [1] "Please make sure there is no overlap between the input genomic regions. Overlap between the input regions may cause error."
    [1] "Identifying window size for each Order"
    [1] "Identifying COREs"
    [1] "Filtering clusters of low order"
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/CREAM/extdata/A549_Chr21_COREs.bed': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: CREAM -> write.table -> file
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘CREAM-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: CREAM
    > ### Title: CREAM is the main function for CORE identification
    > ### Aliases: CREAM
    >
    > ### ** Examples
    >
    > CREAM(system.file("extdata", "A549_Chr21.bed", package = "CREAM"),
    + system.file("extdata", "A549_Chr21_COREs.bed", package = "CREAM"),
    + MinLength = 1000, peakNumMin = 2)
    [1] "Please make sure there is no overlap between the input genomic regions. Overlap between the input regions may cause error."
    [1] "Identifying window size for each Order"
    [1] "Identifying COREs"
    [1] "Filtering clusters of low order"
    Warning in file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/CREAM/extdata/A549_Chr21_COREs.bed': Read-only file system
    Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
    Calls: CREAM -> write.table -> file
    Execution halted
Flavor: r-release-linux-x86_64