Last updated on 2018-05-09 22:48:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 6.77 | 180.23 | 187.00 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 4.83 | 141.30 | 146.13 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 443.77 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 420.12 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.3.0 | 12.00 | 330.00 | 342.00 | OK | |
| r-patched-linux-x86_64 | 1.3.0 | 4.81 | 180.03 | 184.84 | WARN | |
| r-patched-solaris-x86 | 1.3.0 | 171.90 | WARN | |||
| r-release-linux-x86_64 | 1.3.0 | 5.50 | 173.31 | 178.81 | WARN | |
| r-release-windows-ix86+x86_64 | 1.3.0 | 12.00 | 330.00 | 342.00 | OK | |
| r-release-osx-x86_64 | 1.3.0 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.0 | 21.00 | 441.00 | 462.00 | OK | |
| r-oldrel-osx-x86_64 | 1.3.0 | WARN |
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: Rcpp
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
the number of chains is less than 1; sampling not done
Saving compiled model to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
Quitting from lines 145-146 (DeLorean.Rmd)
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: Rcpp
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
the number of chains is less than 1; sampling not done
Saving compiled model to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
Quitting from lines 145-146 (DeLorean.Rmd)
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: Rcpp
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
the number of chains is less than 1; sampling not done
Saving compiled model to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
Quitting from lines 145-146 (DeLorean.Rmd)
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: Rcpp
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
Quitting from lines 145-146 (DeLorean.Rmd)
Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
Compilation ERROR, function(s)/method(s) not created! "/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 39: Error: The function "malloc" must have a prototype.
"/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 148: Error: The function "free" must have a prototype.
"/home/ripley/R/Lib32/StanHeaders/include/stan/math/memory/stack_alloc.hpp", line 235: Error: The function "free" must have a prototype.
"/tmp/RtmpDmaGxF/RLIBS_3ebc5d45729a/BH/include/boost/config/compiler/sunpro_cc.hpp", line 117: Warning (Anachronism): Attempt to redefine BOOST_NO_CXX11_RVALUE_REFERENCES without using #undef.
"/tmp/RtmpDmaGxF/RLIBS_3ebc5d45729a/RcppEigen/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h", line 49: Error: Cannot define member of undefined specialization "unary_evaluator<CwiseUnaryOp<UnaryOp, ArgType>, Eigen::internal::IteratorBased>".
"/tmp/RtmpDmaGxF/RLIBS_3ebc
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Loading required package: Rcpp
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "gene"
Joining, by = "cell"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Have 35 cells after filtering
Joining, by = "cell"
Have 20 genes after filtering
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "gene"
Joining, by = "cell"
Joining, by = c("cell", "capture")
Compiling model
the number of chains is less than 1; sampling not done
Saving compiled model to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/DeLorean/extdata/exact-sizes.rds
Quitting from lines 145-146 (DeLorean.Rmd)
Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
cannot open the connection
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
TSP:scaled:ica:8; time=0.120000000000005s; LL=-3447.5151069698
GW:scaled:ica:8; time=0.00300000000001432s; LL=-3439.24506518021
HC:scaled:ica:8; time=0.00999999999999091s; LL=-3473.80820288611
TSP:unscaled:ica:8; time=0.111000000000018s; LL=-3388.60993413668
OLO:scaled:ica:8; time=0.0040000000000191s; LL=-3394.24366811861
HC:unscaled:ica:8; time=0.0040000000000191s; LL=-3529.38063197239
R2E:unscaled:ica:8; time=0.131999999999977s; LL=-3563.2670000221
OLO:unscaled:ica:8; time=0.0040000000000191s; LL=-3423.98676246566
GW:unscaled:ica:8; time=0.0120000000000005s; LL=-3584.01711138082
R2E:scaled:mds:8; time=0.0170000000000243s; LL=-3322.21322980141
TSP:scaled:mds:8; time=0.0160000000000196s; LL=-3291.45957560042
GW:scaled:mds:8; time=0.0120000000000005s; LL=-3300.32070905038
HC:scaled:mds:8; time=0.00999999999999091s; LL=-3420.54453363512
TSP:unscaled:mds:8; time=0.0130000000000337s; LL=-3280.72586950918
OLO:scaled:mds:8; time=0.0029999999999859s; LL=-3290.64693199863
HC:unscaled:mds:8; time=0.00600000000002865s; LL=-3494.50523860056
R2E:unscaled:mds:8; time=0.0149999999999864s; LL=-3374.44275307464
OLO:unscaled:mds:8; time=0.0139999999999532s; LL=-3296.37968949421
GW:unscaled:mds:8; time=0.00600000000002865s; LL=-3306.02539002961
Using ordering OLO:scaled:none:1; LL=-3269.56566007153
Using ordering TSP:scaled:none:1; LL=-3271.06176014517
Quitting from lines 145-146 (DeLorean.Rmd)
Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
No VB fits worked.
Execution halted
Flavor: r-release-osx-x86_64
Version: 1.3.0
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
R2E:scaled:ica:8; time=0.0729999999999933s; LL=-3712.81154349785
HC:scaled:ica:8; time=0.00399999999999068s; LL=-3713.26968770861
GW:scaled:ica:8; time=0.00500000000000966s; LL=-3654.18293807542
OLO:scaled:ica:8; time=0.00499999999999545s; LL=-3584.83725107307
TSP:unscaled:ica:8; time=0.078000000000003s; LL=-3581.30930511167
R2E:unscaled:ica:8; time=0.0790000000000077s; LL=-3696.06358967875
HC:unscaled:ica:8; time=0.00300000000000011s; LL=-3690.2571376739
GW:unscaled:ica:8; time=0.00699999999999079s; LL=-3672.99273236011
OLO:unscaled:ica:8; time=0.00400000000000489s; LL=-3702.0299990698
TSP:scaled:mds:8; time=0.012999999999991s; LL=-3473.97655643982
R2E:scaled:mds:8; time=0.00900000000000034s; LL=-3539.73235477117
HC:scaled:mds:8; time=0.00600000000000023s; LL=-3500.35428409702
GW:scaled:mds:8; time=0.00500000000000966s; LL=-3452.34261568703
OLO:scaled:mds:8; time=0.00600000000000023s; LL=-3423.46281567446
TSP:unscaled:mds:8; time=0.007000000000005s; LL=-3385.56717220274
R2E:unscaled:mds:8; time=0.00999999999999091s; LL=-3444.16799222093
HC:unscaled:mds:8; time=0.00300000000000011s; LL=-3549.08854950727
GW:unscaled:mds:8; time=0.00699999999999079s; LL=-3463.30841374902
OLO:unscaled:mds:8; time=0.00300000000000011s; LL=-3381.45690349794
Using ordering OLO:unscaled:pca:8; LL=-3381.45690349794
Using ordering TSP:unscaled:mds:8; LL=-3385.56717220274
Quitting from lines 145-146 (DeLorean.Rmd)
Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
No VB fits worked.
Execution halted
Flavor: r-oldrel-osx-x86_64