Last updated on 2018-05-09 22:48:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 8.6 | 10.04 | 50.82 | 60.86 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 8.6 | 9.67 | 39.08 | 48.75 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 8.6 | 76.67 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 8.6 | 75.63 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 8.6 | 21.00 | 55.00 | 76.00 | NOTE | |
| r-patched-linux-x86_64 | 8.6 | 12.10 | 49.88 | 61.98 | ERROR | |
| r-patched-solaris-x86 | 8.6 | 92.60 | NOTE | |||
| r-release-linux-x86_64 | 8.6 | 11.27 | 49.50 | 60.77 | ERROR | |
| r-release-windows-ix86+x86_64 | 8.6 | 21.00 | 55.00 | 76.00 | NOTE | |
| r-release-osx-x86_64 | 8.6 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 8.6 | 4.00 | 64.00 | 68.00 | NOTE | |
| r-oldrel-osx-x86_64 | 8.6 | NOTE |
Version: 8.6
Check: R code for possible problems
Result: NOTE
ANNOTATE.run: no visible global function definition for ‘read.table’
BONFERRONI.run: no visible global function definition for ‘write.table’
CALCPDIFF.run: no visible global function definition for ‘cor.test’
CALCPDIFF.run: no visible global function definition for ‘pnorm’
CALCPHET.run: no visible global function definition for ‘pchisq’
CLUMP.run: no visible global function definition for ‘write.table’
CLUMP.run: no visible global function definition for ‘na.omit’
EASYMERGE.init: no visible global function definition for ‘read.table’
EASYMERGE.read: no visible global function definition for ‘read.table’
EASYMERGE.read.10rows: no visible global function definition for
‘read.table’
EVALSTAT.run: no visible global function definition for ‘median’
EVALSTAT.run: no visible global function definition for ‘quantile’
EVALSTAT.run: no visible global function definition for ‘sd’
EXTRACTSNPS.run: no visible global function definition for ‘read.table’
EasyX: no visible global function definition for ‘dev.cur’
EasyX: no visible global function definition for ‘dev.off’
EasyX.run: no visible global function definition for ‘dev.cur’
EasyX.run: no visible global function definition for ‘write.table’
FDR.run: no visible global function definition for ‘p.adjust’
GC.run: no visible global function definition for ‘qchisq’
GC.run: no visible global function definition for ‘read.table’
GC.run: no visible global function definition for ‘median’
GC.run: no visible global function definition for ‘pchisq’
GWADATA.init: no visible global function definition for ‘read.table’
GWADATA.read: no visible global function definition for ‘read.table’
GWADATA.read.10rows: no visible global function definition for
‘read.table’
GWADATA.write: no visible global function definition for ‘write.table’
INDEP.run: no visible global function definition for ‘na.omit’
JOINTTEST.run: no visible global function definition for ‘pchisq’
METAANALYSIS.run: no visible global function definition for ‘pchisq’
METAANALYSIS.run: no visible global function definition for ‘pnorm’
MHPLOT.GWADATA.valid: no visible global function definition for
‘colors’
MHPLOT.GWADATA.valid: no visible global function definition for
‘read.table’
MHPLOT.run: no visible global function definition for ‘read.table’
MHPLOT.run: no visible global function definition for ‘plot’
MHPLOT.run: no visible global function definition for ‘axis’
MHPLOT.run: no visible global function definition for ‘mtext’
MHPLOT.run: no visible global function definition for ‘abline’
MHPLOT.run: no visible global function definition for ‘grid’
MIAMIPLOT.GWADATA.valid: no visible global function definition for
‘colors’
MIAMIPLOT.GWADATA.valid: no visible global function definition for
‘read.table’
MIAMIPLOT.run: no visible global function definition for ‘read.table’
MIAMIPLOT.run: no visible global function definition for ‘plot’
MIAMIPLOT.run: no visible global function definition for ‘points’
MIAMIPLOT.run: no visible global function definition for ‘mtext’
MIAMIPLOT.run: no visible global function definition for ‘axis’
MIAMIPLOT.run: no visible global function definition for ‘abline’
MIAMIPLOT.run: no visible global function definition for ‘grid’
QQPLOT.run: no visible global function definition for ‘par’
QQPLOT.run: no visible global function definition for ‘qbeta’
QQPLOT.run: no visible global function definition for ‘plot’
QQPLOT.run: no visible global function definition for ‘points’
QQPLOT.run: no visible global function definition for ‘axis’
QQPLOT.run: no visible global function definition for ‘abline’
QQPLOT.run: no visible global function definition for ‘read.table’
QQPLOT.run: no visible global function definition for ‘legend’
REPORT.write: no visible global function definition for ‘write.table’
RPLOT.run: no visible global function definition for ‘plot’
RPLOT.run: no visible global function definition for ‘text’
RPLOT.run: no visible global function definition for ‘par’
RPLOT.run: no visible global function definition for ‘grid’
RPLOT.run: no visible global function definition for ‘legend’
SPLOT.run: no visible global function definition for ‘plot’
SPLOT.run: no visible global function definition for ‘text’
SPLOT.run: no visible global function definition for ‘par’
SPLOT.run: no visible global function definition for ‘arrows’
SPLOT.run: no visible global function definition for ‘points’
SPLOT.run: no visible global function definition for ‘grid’
SPLOT.run: no visible global function definition for ‘abline’
SPLOT.run: no visible global function definition for ‘legend’
fnAddMultiPng: no visible global function definition for ‘dev.set’
fnAddMultiPng: no visible global function definition for ‘dev.list’
fnAddPlot: no visible global function definition for ‘dev.set’
fnAddPlot: no visible global function definition for ‘dev.list’
fnCloseMultiPng: no visible global function definition for ‘dev.off’
fnClosePlot: no visible global function definition for ‘dev.off’
fnOpenMultiPlot: no visible global function definition for ‘par’
fnOpenMultiPng: no visible global function definition for ‘par’
fnOpenPlot: no visible global function definition for ‘par’
fnOpenPng.Boxplot: no visible global function definition for ‘par’
fnOpenPng.MH: no visible global function definition for ‘par’
fnOpenPng.Miami: no visible global function definition for ‘par’
validANNOTATE: no visible global function definition for ‘read.table’
validEXTRACTSNPS: no visible global function definition for
‘read.table’
validQQPLOT: no visible global function definition for ‘read.table’
validRPLOT: no visible global function definition for ‘colors’
validSPLOT: no visible global function definition for ‘colors’
Undefined global functions or variables:
abline arrows axis colors cor.test dev.cur dev.list dev.off dev.set
grid legend median mtext na.omit p.adjust par pchisq plot pnorm
points qbeta qchisq quantile read.table sd text write.table
Consider adding
importFrom("grDevices", "colors", "dev.cur", "dev.list", "dev.off",
"dev.set")
importFrom("graphics", "abline", "arrows", "axis", "grid", "legend",
"mtext", "par", "plot", "points", "text")
importFrom("stats", "cor.test", "median", "na.omit", "p.adjust",
"pchisq", "pnorm", "qbeta", "qchisq", "quantile", "sd")
importFrom("utils", "read.table", "write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 8.6
Check: examples
Result: ERROR
Running examples in ‘EasyStrata-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EasyStrata
> ### Title: Function to run EasyStrata (v8.6).
> ### Aliases: EasyStrata
>
> ### ** Examples
>
> extDataDir=system.file("extdata", package="EasyStrata")
> ## Example Pipeline:
> ecfPipe=paste(extDataDir,"example_pipeline.ecf",sep="/")
> EasyStrata(ecfPipe)
Warning message:
In file(fileLog, open = "a") :
cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/EasyStrata/extdata/example_pipeline.ecf.out': Read-only file system
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 8.6
Check: examples
Result: ERROR
Running examples in ‘EasyStrata-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EasyStrata
> ### Title: Function to run EasyStrata (v8.6).
> ### Aliases: EasyStrata
>
> ### ** Examples
>
> extDataDir=system.file("extdata", package="EasyStrata")
> ## Example Pipeline:
> ecfPipe=paste(extDataDir,"example_pipeline.ecf",sep="/")
> EasyStrata(ecfPipe)
Warning message:
In file(fileLog, open = "a") :
cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/EasyStrata/extdata/example_pipeline.ecf.out': Read-only file system
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 8.6
Check: examples
Result: ERROR
Running examples in ‘EasyStrata-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EasyStrata
> ### Title: Function to run EasyStrata (v8.6).
> ### Aliases: EasyStrata
>
> ### ** Examples
>
> extDataDir=system.file("extdata", package="EasyStrata")
> ## Example Pipeline:
> ecfPipe=paste(extDataDir,"example_pipeline.ecf",sep="/")
> EasyStrata(ecfPipe)
Warning message:
In file(fileLog, open = "a") :
cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/EasyStrata/extdata/example_pipeline.ecf.out': Read-only file system
Execution halted
Flavor: r-patched-linux-x86_64
Version: 8.6
Check: examples
Result: ERROR
Running examples in ‘EasyStrata-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: EasyStrata
> ### Title: Function to run EasyStrata (v8.6).
> ### Aliases: EasyStrata
>
> ### ** Examples
>
> extDataDir=system.file("extdata", package="EasyStrata")
> ## Example Pipeline:
> ecfPipe=paste(extDataDir,"example_pipeline.ecf",sep="/")
> EasyStrata(ecfPipe)
Warning message:
In file(fileLog, open = "a") :
cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/EasyStrata/extdata/example_pipeline.ecf.out': Read-only file system
Execution halted
Flavor: r-release-linux-x86_64