CRAN Package Check Results for Package MAGNAMWAR

Last updated on 2018-05-09 22:48:37 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	2.0.3	8.13	83.72	91.85	ERROR
r-devel-linux-x86_64-debian-gcc	2.0.3	5.68	65.60	71.28	ERROR
r-devel-linux-x86_64-fedora-clang	2.0.3			119.84	OK
r-devel-linux-x86_64-fedora-gcc	2.0.3			113.30	OK
r-devel-windows-ix86+x86_64	2.0.3	14.00	84.00	98.00	OK
r-patched-linux-x86_64	2.0.3	6.92	71.25	78.17	ERROR
r-patched-solaris-x86	2.0.3			148.60	OK
r-release-linux-x86_64	2.0.3	6.71	70.90	77.61	ERROR
r-release-windows-ix86+x86_64	2.0.3	14.00	84.00	98.00	OK
r-release-osx-x86_64	2.0.3				OK
r-oldrel-windows-ix86+x86_64	2.0.3	16.00	169.00	185.00	OK
r-oldrel-osx-x86_64	2.0.3				OK

Check Details

Version: 2.0.3
Check: examples
Result: ERROR
    Running examples in ‘MAGNAMWAR-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: FormatMCLFastas
    > ### Title: Format all raw GenBank fastas to single OrthoMCL compatible
    > ### fasta file
    > ### Aliases: FormatMCLFastas
    >
    > ### ** Examples
    >
    >
    > dir <- system.file('extdata', 'fasta_dir', package='MAGNAMWAR')
    > dir <- paste(dir,'/',sep='')
    > formatted_file <- FormatMCLFastas(dir)
    Warning in file.remove(outfile) :
     cannot remove file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta', reason 'Read-only file system'
    Writing out to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta
    Warning in file(description = file.out, open = open) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta': Read-only file system
    Error in file(description = file.out, open = open) :
     cannot open the connection
    Calls: FormatMCLFastas -> <Anonymous> -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.0.3
Check: examples
Result: ERROR
    Running examples in ‘MAGNAMWAR-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: FormatMCLFastas
    > ### Title: Format all raw GenBank fastas to single OrthoMCL compatible
    > ### fasta file
    > ### Aliases: FormatMCLFastas
    >
    > ### ** Examples
    >
    >
    > dir <- system.file('extdata', 'fasta_dir', package='MAGNAMWAR')
    > dir <- paste(dir,'/',sep='')
    > formatted_file <- FormatMCLFastas(dir)
    Warning in file.remove(outfile) :
     cannot remove file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta', reason 'Read-only file system'
    Writing out to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta
    Warning in file(description = file.out, open = open) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta': Read-only file system
    Error in file(description = file.out, open = open) :
     cannot open the connection
    Calls: FormatMCLFastas -> <Anonymous> -> file
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 2.0.3
Check: examples
Result: ERROR
    Running examples in ‘MAGNAMWAR-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: FormatMCLFastas
    > ### Title: Format all raw GenBank fastas to single OrthoMCL compatible
    > ### fasta file
    > ### Aliases: FormatMCLFastas
    >
    > ### ** Examples
    >
    >
    > dir <- system.file('extdata', 'fasta_dir', package='MAGNAMWAR')
    > dir <- paste(dir,'/',sep='')
    > formatted_file <- FormatMCLFastas(dir)
    Warning in file.remove(outfile) :
     cannot remove file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta', reason 'Read-only file system'
    Writing out to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta
    Warning in file(description = file.out, open = open) :
     cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta': Read-only file system
    Error in file(description = file.out, open = open) :
     cannot open the connection
    Calls: FormatMCLFastas -> <Anonymous> -> file
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 2.0.3
Check: examples
Result: ERROR
    Running examples in ‘MAGNAMWAR-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: FormatMCLFastas
    > ### Title: Format all raw GenBank fastas to single OrthoMCL compatible
    > ### fasta file
    > ### Aliases: FormatMCLFastas
    >
    > ### ** Examples
    >
    >
    > dir <- system.file('extdata', 'fasta_dir', package='MAGNAMWAR')
    > dir <- paste(dir,'/',sep='')
    > formatted_file <- FormatMCLFastas(dir)
    Warning in file.remove(outfile) :
     cannot remove file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta', reason 'Read-only file system'
    Writing out to /home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta
    Warning in file(description = file.out, open = open) :
     cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/MAGNAMWAR/extdata/fasta_dir/MCLformatted_all.fasta': Read-only file system
    Error in file(description = file.out, open = open) :
     cannot open the connection
    Calls: FormatMCLFastas -> <Anonymous> -> file
    Execution halted
Flavor: r-release-linux-x86_64