Last updated on 2018-05-09 22:48:38 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3 | 1.42 | 18.20 | 19.62 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3 | 1.18 | 14.33 | 15.51 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3 | 24.46 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3 | 22.97 | WARN | |||
| r-devel-windows-ix86+x86_64 | 1.3 | 5.00 | 28.00 | 33.00 | WARN | |
| r-patched-linux-x86_64 | 1.3 | 1.15 | 17.23 | 18.38 | ERROR | |
| r-patched-solaris-x86 | 1.3 | 37.70 | WARN | |||
| r-release-linux-x86_64 | 1.3 | 1.39 | 17.28 | 18.67 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.3 | 5.00 | 28.00 | 33.00 | WARN | |
| r-release-osx-x86_64 | 1.3 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3 | 2.00 | 25.00 | 27.00 | OK | |
| r-oldrel-osx-x86_64 | 1.3 | OK |
Version: 1.3
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046,
+ dir=system.file("extdata", package="MetaSubtract"))
[1] "Tue May 8 05:50:53 2018"
Reading meta_results.txt
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file 'MetaSubtract.log': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046,
+ dir=system.file("extdata", package="MetaSubtract"))
[1] "Wed May 9 16:59:24 2018"
Reading meta_results.txt
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file 'MetaSubtract.log': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3
Check: examples
Result: WARN
Found the following significant warnings:
Warning: working directory was changed to ‘/data/gannet/ripley/R/packages/tests-clang/MetaSubtract.Rcheck/MetaSubtract/extdata’, resetting
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3
Check: examples
Result: WARN
Found the following significant warnings:
Warning: working directory was changed to ‘/data/gannet/ripley/R/packages/tests-devel/MetaSubtract.Rcheck/MetaSubtract/extdata’, resetting
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3
Check: examples
Result: WARN
Found the following significant warnings:
Warning: working directory was changed to 'D:/temp/RtmpmWRkzq/RLIBS_f95849fb5f0e/MetaSubtract/extdata', resetting
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64
Version: 1.3
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046,
+ dir=system.file("extdata", package="MetaSubtract"))
[1] "Tue May 8 17:44:19 2018"
Reading meta_results.txt
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file 'MetaSubtract.log': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3
Check: examples
Result: WARN
Found the following significant warnings:
Warning: working directory was changed to ‘/home/ripley/R/Lib32/MetaSubtract/extdata’, resetting
Flavor: r-patched-solaris-x86
Version: 1.3
Check: examples
Result: ERROR
Running examples in ‘MetaSubtract-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: meta.subtract
> ### Title: Subtracts GWAS results from one or more cohorts from the
> ### meta-GWAS results
> ### Aliases: meta.subtract
> ### Keywords: Correct meta-GWAS results Leave-one-out
>
> ### ** Examples
>
> metafile="meta_results.txt"
> cohortfiles=c("cohort1_results.txt","cohort2_results.txt")
> # Subtract summary statistics of the two cohorts from the meta summary statistics in metafile.
> # Genomic control correction of the imported meta summary statistics will be undone using
> # lambda.meta. Genomic control will be applied to the corrected meta summary statistics
> # (gc_meta=TRUE by default) based on a lambda derived from the new meta summary statistics
> # (calculate_lambda.meta=TRUE by default). The cohorts summary statistics will always be first
> # corrected for genomic control before subtracting them from the meta summary statistics. By
> # default, the lambda will be calculated from the data (calculate_lambdas.cohort=TRUE by default).
> m1<-meta.subtract(metafile=metafile, cohortfiles=cohortfiles, lambda.meta=1.046,
+ dir=system.file("extdata", package="MetaSubtract"))
[1] "Wed May 9 05:43:38 2018"
Reading meta_results.txt
Warning in file(file, ifelse(append, "a", "w")) :
cannot open file 'MetaSubtract.log': Read-only file system
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: meta.subtract -> write.table -> file
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.3
Check: examples
Result: WARN
Found the following significant warnings:
Warning: working directory was changed to ‘/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.5/MetaSubtract.Rcheck/MetaSubtract/extdata’, resetting
Flavor: r-release-osx-x86_64