CRAN Package Check Results for Package pkgmaker

Last updated on 2018-05-09 22:48:43 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.22 4.55 48.89 53.44 ERROR
r-devel-linux-x86_64-debian-gcc 0.22 5.27 38.04 43.31 ERROR
r-devel-linux-x86_64-fedora-clang 0.22 66.69 NOTE
r-devel-linux-x86_64-fedora-gcc 0.22 64.44 NOTE
r-devel-windows-ix86+x86_64 0.22 12.00 108.00 120.00 NOTE
r-patched-linux-x86_64 0.22 4.95 47.30 52.25 ERROR
r-patched-solaris-x86 0.22 90.30 NOTE
r-release-linux-x86_64 0.22 5.79 47.30 53.09 ERROR
r-release-windows-ix86+x86_64 0.22 12.00 108.00 120.00 NOTE
r-release-osx-x86_64 0.22 NOTE
r-oldrel-windows-ix86+x86_64 0.22 8.00 79.00 87.00 NOTE
r-oldrel-osx-x86_64 0.22 WARN

Check Details

Version: 0.22
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘argparse’ ‘devtools’ ‘knitr’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.22
Check: R code for possible problems
Result: NOTE
    .existsTestLogger: no visible binding for global variable ‘.testLogger’
    .silenceF : <anonymous>: no visible global function definition for
     ‘capture.output’
    CLIArgumentParser: no visible global function definition for
     ‘ArgumentParser’
    CLIArgumentParser: no visible global function definition for ‘proto’
    CLIArgumentParser : <anonymous>: no visible global function definition
     for ‘capture.output’
    RdSection2latex: no visible global function definition for
     ‘capture.output’
    RdSection2latex: no visible global function definition for ‘tail’
    as.package: no visible global function definition for ‘untar’
    as.rnw: no visible global function definition for ‘RweaveLatex’
    checkPlot: no visible global function definition for ‘png’
    checkPlot: no visible global function definition for ‘dev.off’
    chunkOutputHook : <anonymous> : <anonymous>: no visible binding for
     global variable ‘knit_hooks’
    cite_pkg: no visible global function definition for ‘read.bib’
    extractLocalFun: no visible global function definition for
     ‘capture.output’
    extractLocalFun: no visible global function definition for ‘tail’
    hook_backspace : <anonymous>: no visible binding for global variable
     ‘knit_hooks’
    is.dir: no visible global function definition for ‘file_test’
    is.file: no visible global function definition for ‘file_test’
    isPackageInstalled : <anonymous>: no visible global function definition
     for ‘compareVersion’
    knit_ex: no visible global function definition for ‘knit2html’
    knit_ex: no visible global function definition for ‘browseURL’
    knit_ex: no visible global function definition for ‘knit’
    latex_bibliography: no visible binding for global variable ‘knit_hooks’
    makeUnitVignette: no visible global function definition for ‘getErrors’
    packageData: no visible global function definition for ‘data’
    packageMakefile: no visible global function definition for
     ‘capture.output’
    parseCMD: no visible global function definition for ‘capture.output’
    parseCMD: no visible global function definition for ‘str’
    print.package_options: no visible global function definition for ‘str’
    qlibrary: no visible global function definition for ‘capture.output’
    rnw: no visible global function definition for ‘par’
    runVignette.rnw_knitr: no visible binding for global variable
     ‘opts_chunk’
    runVignette.rnw_knitr: no visible global function definition for
     ‘knit2pdf’
    runVignette.rnw_knitr: no visible global function definition for ‘knit’
    runVignette.rnw_sweave: no visible global function definition for
     ‘Sweave’
    str_diff: no visible global function definition for ‘head’
    str_fun: no visible global function definition for ‘capture.output’
    str_out: no visible global function definition for ‘head’
    str_out: no visible global function definition for ‘tail’
    utestFramework: no visible global function definition for
     ‘capture.output’
    vignetteMakefile: no visible global function definition for
     ‘packageDescription’
    write.pkgbib: no visible global function definition for
     ‘installed.packages’
    write.pkgbib : <anonymous>: no visible global function definition for
     ‘citation’
    write.pkgbib: no visible global function definition for ‘toBibtex’
    writeUnitVignette: no visible global function definition for ‘toLatex’
    writeUnitVignette: no visible global function definition for
     ‘sessionInfo’
    write_PACKAGES_index: no visible global function definition for
     ‘contrib.url’
    write_PACKAGES_index: no visible global function definition for
     ‘available.packages’
    write_PACKAGES_index: no visible global function definition for
     ‘HTMLReport’
    write_PACKAGES_index : linkPackage: no visible global function
     definition for ‘hwrite’
    write_PACKAGES_index: no visible global function definition for
     ‘publish’
    write_PACKAGES_index: no visible global function definition for
     ‘knit2html’
    write_PACKAGES_index: no visible global function definition for
     ‘finish’
    utest,RUnitTestSuite: no visible global function definition for
     ‘capture.output’
    utest,RUnitTestSuite: no visible global function definition for
     ‘runTestSuite’
    utest,RUnitTestSuite: no visible global function definition for
     ‘printTextProtocol’
    utest,RUnitTestSuite: no visible global function definition for
     ‘printHTMLProtocol’
    utest,RUnitTestSuite: no visible global function definition for
     ‘getErrors’
    utest,character: no visible binding for global variable ‘devtools’
    utest,character: no visible global function definition for ‘is.package’
    utest,character: no visible global function definition for ‘load_all’
    utest,character: no visible global function definition for
     ‘defineTestSuite’
    utest,character: no visible global function definition for ‘str’
    utest,character: no visible global function definition for ‘test_dir’
    utest,character: no visible global function definition for
     ‘runTestFile’
    utest,character: no visible global function definition for ‘test_file’
    Undefined global functions or variables:
     .testLogger ArgumentParser HTMLReport RweaveLatex Sweave
     available.packages browseURL capture.output citation compareVersion
     contrib.url data defineTestSuite dev.off devtools file_test finish
     getErrors head hwrite installed.packages is.package knit knit2html
     knit2pdf knit_hooks load_all opts_chunk packageDescription par png
     printHTMLProtocol printTextProtocol proto publish read.bib
     runTestFile runTestSuite sessionInfo str tail test_dir test_file
     toBibtex toLatex untar
    Consider adding
     importFrom("grDevices", "dev.off", "png")
     importFrom("graphics", "par")
     importFrom("utils", "RweaveLatex", "Sweave", "available.packages",
     "browseURL", "capture.output", "citation", "compareVersion",
     "contrib.url", "data", "file_test", "head",
     "installed.packages", "packageDescription", "sessionInfo",
     "str", "tail", "toBibtex", "toLatex", "untar")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.22
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [1s/1s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Run all unit tests in installed directory unitTests
     > #
     > # Author: Renaud Gaujoux
     > ###############################################################################
     >
     > pkgmaker::utest('package:pkgmaker', quiet=FALSE)
     #########################
     Loading required package: registry
    
     Attaching package: 'pkgmaker'
    
     The following objects are masked from 'package:base':
    
     isFALSE, isNamespaceLoaded
    
     Running unit tests in: '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests'
     Using unit test framework: RUnit
     Using RUnit framework provider: RUnit
     List of 6
     $ name : chr "package:pkgmaker"
     $ dirs : chr "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests"
     $ testFileRegexp: chr "^runit.*\\.[rR]$"
     $ testFuncRegexp: chr "^test\\."
     $ rngKind : chr "Marsaglia-Multicarry"
     $ rngNormalKind : chr "Kinderman-Ramage"
     - attr(*, "class")= chr "RUnitTestSuite"
    
    
     Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     In addition: Warning message:
     In dir.create(opath, recursive = TRUE) :
     cannot create dir '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode=''].
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     done successfully.
    
    
    
     Executing test function test.Sys.getenv_value ... done successfully.
    
    
    
     Executing test function test.errorCheck ... done successfully.
    
    
    
     Executing test function test.str_bs ... done successfully.
    
     ------------------- UNIT TEST SUMMARY ---------------------
    
     Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
     Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
     In addition: Warning message:
     In file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.22
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [1s/1s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Run all unit tests in installed directory unitTests
     > #
     > # Author: Renaud Gaujoux
     > ###############################################################################
     >
     > pkgmaker::utest('package:pkgmaker', quiet=FALSE)
     #########################
     Loading required package: registry
    
     Attaching package: 'pkgmaker'
    
     The following objects are masked from 'package:base':
    
     isFALSE, isNamespaceLoaded
    
     Running unit tests in: '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests'
     Using unit test framework: RUnit
     Using RUnit framework provider: RUnit
     List of 6
     $ name : chr "package:pkgmaker"
     $ dirs : chr "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests"
     $ testFileRegexp: chr "^runit.*\\.[rR]$"
     $ testFuncRegexp: chr "^test\\."
     $ rngKind : chr "Marsaglia-Multicarry"
     $ rngNormalKind : chr "Kinderman-Ramage"
     - attr(*, "class")= chr "RUnitTestSuite"
    
    
     Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     In addition: Warning message:
     In dir.create(opath, recursive = TRUE) :
     cannot create dir '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode=''].
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     done successfully.
    
    
    
     Executing test function test.Sys.getenv_value ... done successfully.
    
    
    
     Executing test function test.errorCheck ... done successfully.
    
    
    
     Executing test function test.str_bs ... done successfully.
    
     ------------------- UNIT TEST SUMMARY ---------------------
    
     Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
     Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
     In addition: Warning message:
     In file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.22
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [1s/1s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Run all unit tests in installed directory unitTests
     > #
     > # Author: Renaud Gaujoux
     > ###############################################################################
     >
     > pkgmaker::utest('package:pkgmaker', quiet=FALSE)
     #########################
     Loading required package: registry
    
     Attaching package: 'pkgmaker'
    
     The following objects are masked from 'package:base':
    
     isFALSE, isNamespaceLoaded
    
     Running unit tests in: '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests'
     Using unit test framework: RUnit
     Using RUnit framework provider: RUnit
     List of 6
     $ name : chr "package:pkgmaker"
     $ dirs : chr "/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests"
     $ testFileRegexp: chr "^runit.*\\.[rR]$"
     $ testFuncRegexp: chr "^test\\."
     $ rngKind : chr "Marsaglia-Multicarry"
     $ rngNormalKind : chr "Kinderman-Ramage"
     - attr(*, "class")= chr "RUnitTestSuite"
    
    
     Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     In addition: Warning message:
     In dir.create(opath, recursive = TRUE) :
     cannot create dir '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode=''].
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     done successfully.
    
    
    
     Executing test function test.Sys.getenv_value ... done successfully.
    
    
    
     Executing test function test.errorCheck ... done successfully.
    
    
    
     Executing test function test.str_bs ... done successfully.
    
     ------------------- UNIT TEST SUMMARY ---------------------
    
     Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
     Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
     In addition: Warning message:
     In file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.22
Check: tests
Result: ERROR
     Running ‘doRUnit.R’ [1s/1s]
    Running the tests in ‘tests/doRUnit.R’ failed.
    Complete output:
     > # Run all unit tests in installed directory unitTests
     > #
     > # Author: Renaud Gaujoux
     > ###############################################################################
     >
     > pkgmaker::utest('package:pkgmaker', quiet=FALSE)
     #########################
     Loading required package: registry
    
     Attaching package: 'pkgmaker'
    
     The following objects are masked from 'package:base':
    
     isFALSE, isNamespaceLoaded
    
     Running unit tests in: '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests'
     Using unit test framework: RUnit
     Using RUnit framework provider: RUnit
     List of 6
     $ name : chr "package:pkgmaker"
     $ dirs : chr "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests"
     $ testFileRegexp: chr "^runit.*\\.[rR]$"
     $ testFuncRegexp: chr "^test\\."
     $ rngKind : chr "Marsaglia-Multicarry"
     $ rngNormalKind : chr "Kinderman-Ramage"
     - attr(*, "class")= chr "RUnitTestSuite"
    
    
     Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
     done successfully.
    
    
    
     Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     In addition: Warning message:
     In dir.create(opath, recursive = TRUE) :
     cannot create dir '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode='r'].
     Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
     Could not write attribute 'a': permission denied [mode=''].
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
     done successfully.
    
    
    
     Executing test function test.Sys.getenv_value ... done successfully.
    
    
    
     Executing test function test.errorCheck ... done successfully.
    
    
    
     Executing test function test.str_bs ... done successfully.
    
     ------------------- UNIT TEST SUMMARY ---------------------
    
     Error in file(file, ifelse(append, "a", "w")) :
     cannot open the connection
     Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
     In addition: Warning message:
     In file(file, ifelse(append, "a", "w")) :
     cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.22
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘ReportingTools’
Flavor: r-release-osx-x86_64

Version: 0.22
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘devtools’ ‘ReportingTools’
Flavor: r-oldrel-osx-x86_64

Version: 0.22
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘devtools’
Flavor: r-oldrel-osx-x86_64

Version: 0.22
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning: running command 'kpsewhich framed.sty' had status 1
    Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
     unable to find LaTeX package 'framed'; will use a copy from knitr
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'pkgmaker-unitTests.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `vmargin.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.58 \setmargrb
     {0.75in}{0.75in}{0.75in}{0.75in}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-oldrel-osx-x86_64