Last updated on 2018-05-09 22:48:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.22 | 4.55 | 48.89 | 53.44 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.22 | 5.27 | 38.04 | 43.31 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.22 | 66.69 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.22 | 64.44 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 0.22 | 12.00 | 108.00 | 120.00 | NOTE | |
| r-patched-linux-x86_64 | 0.22 | 4.95 | 47.30 | 52.25 | ERROR | |
| r-patched-solaris-x86 | 0.22 | 90.30 | NOTE | |||
| r-release-linux-x86_64 | 0.22 | 5.79 | 47.30 | 53.09 | ERROR | |
| r-release-windows-ix86+x86_64 | 0.22 | 12.00 | 108.00 | 120.00 | NOTE | |
| r-release-osx-x86_64 | 0.22 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 0.22 | 8.00 | 79.00 | 87.00 | NOTE | |
| r-oldrel-osx-x86_64 | 0.22 | WARN |
Version: 0.22
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls in package code:
‘argparse’ ‘devtools’ ‘knitr’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.22
Check: R code for possible problems
Result: NOTE
.existsTestLogger: no visible binding for global variable ‘.testLogger’
.silenceF : <anonymous>: no visible global function definition for
‘capture.output’
CLIArgumentParser: no visible global function definition for
‘ArgumentParser’
CLIArgumentParser: no visible global function definition for ‘proto’
CLIArgumentParser : <anonymous>: no visible global function definition
for ‘capture.output’
RdSection2latex: no visible global function definition for
‘capture.output’
RdSection2latex: no visible global function definition for ‘tail’
as.package: no visible global function definition for ‘untar’
as.rnw: no visible global function definition for ‘RweaveLatex’
checkPlot: no visible global function definition for ‘png’
checkPlot: no visible global function definition for ‘dev.off’
chunkOutputHook : <anonymous> : <anonymous>: no visible binding for
global variable ‘knit_hooks’
cite_pkg: no visible global function definition for ‘read.bib’
extractLocalFun: no visible global function definition for
‘capture.output’
extractLocalFun: no visible global function definition for ‘tail’
hook_backspace : <anonymous>: no visible binding for global variable
‘knit_hooks’
is.dir: no visible global function definition for ‘file_test’
is.file: no visible global function definition for ‘file_test’
isPackageInstalled : <anonymous>: no visible global function definition
for ‘compareVersion’
knit_ex: no visible global function definition for ‘knit2html’
knit_ex: no visible global function definition for ‘browseURL’
knit_ex: no visible global function definition for ‘knit’
latex_bibliography: no visible binding for global variable ‘knit_hooks’
makeUnitVignette: no visible global function definition for ‘getErrors’
packageData: no visible global function definition for ‘data’
packageMakefile: no visible global function definition for
‘capture.output’
parseCMD: no visible global function definition for ‘capture.output’
parseCMD: no visible global function definition for ‘str’
print.package_options: no visible global function definition for ‘str’
qlibrary: no visible global function definition for ‘capture.output’
rnw: no visible global function definition for ‘par’
runVignette.rnw_knitr: no visible binding for global variable
‘opts_chunk’
runVignette.rnw_knitr: no visible global function definition for
‘knit2pdf’
runVignette.rnw_knitr: no visible global function definition for ‘knit’
runVignette.rnw_sweave: no visible global function definition for
‘Sweave’
str_diff: no visible global function definition for ‘head’
str_fun: no visible global function definition for ‘capture.output’
str_out: no visible global function definition for ‘head’
str_out: no visible global function definition for ‘tail’
utestFramework: no visible global function definition for
‘capture.output’
vignetteMakefile: no visible global function definition for
‘packageDescription’
write.pkgbib: no visible global function definition for
‘installed.packages’
write.pkgbib : <anonymous>: no visible global function definition for
‘citation’
write.pkgbib: no visible global function definition for ‘toBibtex’
writeUnitVignette: no visible global function definition for ‘toLatex’
writeUnitVignette: no visible global function definition for
‘sessionInfo’
write_PACKAGES_index: no visible global function definition for
‘contrib.url’
write_PACKAGES_index: no visible global function definition for
‘available.packages’
write_PACKAGES_index: no visible global function definition for
‘HTMLReport’
write_PACKAGES_index : linkPackage: no visible global function
definition for ‘hwrite’
write_PACKAGES_index: no visible global function definition for
‘publish’
write_PACKAGES_index: no visible global function definition for
‘knit2html’
write_PACKAGES_index: no visible global function definition for
‘finish’
utest,RUnitTestSuite: no visible global function definition for
‘capture.output’
utest,RUnitTestSuite: no visible global function definition for
‘runTestSuite’
utest,RUnitTestSuite: no visible global function definition for
‘printTextProtocol’
utest,RUnitTestSuite: no visible global function definition for
‘printHTMLProtocol’
utest,RUnitTestSuite: no visible global function definition for
‘getErrors’
utest,character: no visible binding for global variable ‘devtools’
utest,character: no visible global function definition for ‘is.package’
utest,character: no visible global function definition for ‘load_all’
utest,character: no visible global function definition for
‘defineTestSuite’
utest,character: no visible global function definition for ‘str’
utest,character: no visible global function definition for ‘test_dir’
utest,character: no visible global function definition for
‘runTestFile’
utest,character: no visible global function definition for ‘test_file’
Undefined global functions or variables:
.testLogger ArgumentParser HTMLReport RweaveLatex Sweave
available.packages browseURL capture.output citation compareVersion
contrib.url data defineTestSuite dev.off devtools file_test finish
getErrors head hwrite installed.packages is.package knit knit2html
knit2pdf knit_hooks load_all opts_chunk packageDescription par png
printHTMLProtocol printTextProtocol proto publish read.bib
runTestFile runTestSuite sessionInfo str tail test_dir test_file
toBibtex toLatex untar
Consider adding
importFrom("grDevices", "dev.off", "png")
importFrom("graphics", "par")
importFrom("utils", "RweaveLatex", "Sweave", "available.packages",
"browseURL", "capture.output", "citation", "compareVersion",
"contrib.url", "data", "file_test", "head",
"installed.packages", "packageDescription", "sessionInfo",
"str", "tail", "toBibtex", "toLatex", "untar")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 0.22
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [1s/1s]
Running the tests in ‘tests/doRUnit.R’ failed.
Complete output:
> # Run all unit tests in installed directory unitTests
> #
> # Author: Renaud Gaujoux
> ###############################################################################
>
> pkgmaker::utest('package:pkgmaker', quiet=FALSE)
#########################
Loading required package: registry
Attaching package: 'pkgmaker'
The following objects are masked from 'package:base':
isFALSE, isNamespaceLoaded
Running unit tests in: '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests'
Using unit test framework: RUnit
Using RUnit framework provider: RUnit
List of 6
$ name : chr "package:pkgmaker"
$ dirs : chr "/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests"
$ testFileRegexp: chr "^runit.*\\.[rR]$"
$ testFuncRegexp: chr "^test\\."
$ rngKind : chr "Marsaglia-Multicarry"
$ rngNormalKind : chr "Kinderman-Ramage"
- attr(*, "class")= chr "RUnitTestSuite"
Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
In addition: Warning message:
In dir.create(opath, recursive = TRUE) :
cannot create dir '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode=''].
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
done successfully.
Executing test function test.Sys.getenv_value ... done successfully.
Executing test function test.errorCheck ... done successfully.
Executing test function test.str_bs ... done successfully.
------------------- UNIT TEST SUMMARY ---------------------
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.22
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [1s/1s]
Running the tests in ‘tests/doRUnit.R’ failed.
Complete output:
> # Run all unit tests in installed directory unitTests
> #
> # Author: Renaud Gaujoux
> ###############################################################################
>
> pkgmaker::utest('package:pkgmaker', quiet=FALSE)
#########################
Loading required package: registry
Attaching package: 'pkgmaker'
The following objects are masked from 'package:base':
isFALSE, isNamespaceLoaded
Running unit tests in: '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests'
Using unit test framework: RUnit
Using RUnit framework provider: RUnit
List of 6
$ name : chr "package:pkgmaker"
$ dirs : chr "/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests"
$ testFileRegexp: chr "^runit.*\\.[rR]$"
$ testFuncRegexp: chr "^test\\."
$ rngKind : chr "Marsaglia-Multicarry"
$ rngNormalKind : chr "Kinderman-Ramage"
- attr(*, "class")= chr "RUnitTestSuite"
Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
In addition: Warning message:
In dir.create(opath, recursive = TRUE) :
cannot create dir '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode=''].
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
done successfully.
Executing test function test.Sys.getenv_value ... done successfully.
Executing test function test.errorCheck ... done successfully.
Executing test function test.str_bs ... done successfully.
------------------- UNIT TEST SUMMARY ---------------------
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.22
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [1s/1s]
Running the tests in ‘tests/doRUnit.R’ failed.
Complete output:
> # Run all unit tests in installed directory unitTests
> #
> # Author: Renaud Gaujoux
> ###############################################################################
>
> pkgmaker::utest('package:pkgmaker', quiet=FALSE)
#########################
Loading required package: registry
Attaching package: 'pkgmaker'
The following objects are masked from 'package:base':
isFALSE, isNamespaceLoaded
Running unit tests in: '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests'
Using unit test framework: RUnit
Using RUnit framework provider: RUnit
List of 6
$ name : chr "package:pkgmaker"
$ dirs : chr "/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests"
$ testFileRegexp: chr "^runit.*\\.[rR]$"
$ testFuncRegexp: chr "^test\\."
$ rngKind : chr "Marsaglia-Multicarry"
$ rngNormalKind : chr "Kinderman-Ramage"
- attr(*, "class")= chr "RUnitTestSuite"
Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
In addition: Warning message:
In dir.create(opath, recursive = TRUE) :
cannot create dir '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode=''].
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
done successfully.
Executing test function test.Sys.getenv_value ... done successfully.
Executing test function test.errorCheck ... done successfully.
Executing test function test.str_bs ... done successfully.
------------------- UNIT TEST SUMMARY ---------------------
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.22
Check: tests
Result: ERROR
Running ‘doRUnit.R’ [1s/1s]
Running the tests in ‘tests/doRUnit.R’ failed.
Complete output:
> # Run all unit tests in installed directory unitTests
> #
> # Author: Renaud Gaujoux
> ###############################################################################
>
> pkgmaker::utest('package:pkgmaker', quiet=FALSE)
#########################
Loading required package: registry
Attaching package: 'pkgmaker'
The following objects are masked from 'package:base':
isFALSE, isNamespaceLoaded
Running unit tests in: '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests'
Using unit test framework: RUnit
Using RUnit framework provider: RUnit
List of 6
$ name : chr "package:pkgmaker"
$ dirs : chr "/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests"
$ testFileRegexp: chr "^runit.*\\.[rR]$"
$ testFuncRegexp: chr "^test\\."
$ rngKind : chr "Marsaglia-Multicarry"
$ rngNormalKind : chr "Kinderman-Ramage"
- attr(*, "class")= chr "RUnitTestSuite"
Executing test function test.option_link ... Setting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.resetOptions ... Resetting package specific options: package:R_GlobalEnv (4 default option(s))
done successfully.
Executing test function test.ExposeAttribute ... Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
In addition: Warning message:
In dir.create(opath, recursive = TRUE) :
cannot create dir '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests-results', reason 'Read-only file system'
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode='r'].
Error in `$<-.ExposeAttribute`(`*tmp*`, a, value = 1) :
Could not write attribute 'a': permission denied [mode=''].
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
Error in `$.ExposeAttribute`(y, a) : Object `y` has no attribute 'a'.
done successfully.
Executing test function test.Sys.getenv_value ... done successfully.
Executing test function test.errorCheck ... done successfully.
Executing test function test.str_bs ... done successfully.
------------------- UNIT TEST SUMMARY ---------------------
Error in file(file, ifelse(append, "a", "w")) :
cannot open the connection
Calls: <Anonymous> ... utest -> .local -> printTextProtocol -> cat -> file
In addition: Warning message:
In file(file, ifelse(append, "a", "w")) :
cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/pkgmaker/tests-results/utest.package_pkgmaker.Summary.txt': No such file or directory
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.22
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘ReportingTools’
Flavor: r-release-osx-x86_64
Version: 0.22
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
‘devtools’ ‘ReportingTools’
Flavor: r-oldrel-osx-x86_64
Version: 0.22
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘devtools’
Flavor: r-oldrel-osx-x86_64
Version: 0.22
Check: re-building of vignette outputs
Result: WARN
Error in re-building vignettes:
...
Warning: running command 'kpsewhich framed.sty' had status 1
Warning in test_latex_pkg("framed", system.file("misc", "framed.sty", package = "knitr")) :
unable to find LaTeX package 'framed'; will use a copy from knitr
Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
Running 'texi2dvi' on 'pkgmaker-unitTests.tex' failed.
LaTeX errors:
! LaTeX Error: File `vmargin.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.58 \setmargrb
{0.75in}{0.75in}{0.75in}{0.75in}^^M
! ==> Fatal error occurred, no output PDF file produced!
Calls: buildVignettes -> texi2pdf -> texi2dvi
Execution halted
Flavor: r-oldrel-osx-x86_64