Last updated on 2018-05-25 08:48:35 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 2.75 | 23.21 | 25.96 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 2.59 | 19.90 | 22.49 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 69.41 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 67.94 | NOTE | |||
| r-devel-windows-ix86+x86_64 | 1.1.1 | 5.00 | 64.00 | 69.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.1 | 2.52 | 24.38 | 26.90 | ERROR | |
| r-patched-solaris-x86 | 1.1.1 | 89.50 | NOTE | |||
| r-release-linux-x86_64 | 1.1.1 | 2.79 | 24.42 | 27.21 | ERROR | |
| r-release-windows-ix86+x86_64 | 1.1.1 | 7.00 | 65.00 | 72.00 | NOTE | |
| r-release-osx-x86_64 | 1.1.1 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.1 | 8.00 | 65.00 | 73.00 | NOTE | |
| r-oldrel-osx-x86_64 | 1.1.1 | NOTE |
Version: 1.1.1
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to ‘mmap’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.1
Check: S3 generic/method consistency
Result: NOTE
Found the following apparent S3 methods exported but not registered:
format.GRtime plot.AccData print.VirtAccData
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64
Version: 1.1.1
Check: R code for possible problems
Result: NOTE
expand: no visible global function definition for ‘tail’
header.info: no visible global function definition for ‘mmap’
header.info: no visible global function definition for ‘char’
header.info: no visible global function definition for ‘is.mmap’
header.info: no visible global function definition for ‘munmap’
plot.stft: no visible global function definition for ‘gray’
plot.stft: no visible global function definition for ‘layout’
plot.stft: no visible global function definition for ‘lines’
plot.stft: no visible global function definition for ‘abline’
plot.stft: no visible global function definition for ‘tail’
plot.stft: no visible global function definition for ‘col2rgb’
plot.stft: no visible global function definition for ‘palette’
plot.stft: no visible global function definition for ‘rgb’
plot.stft: no visible global function definition for ‘points’
plot.stft: no visible global function definition for ‘image’
print.AccData: no visible global function definition for ‘object.size’
print.AccData: no visible global function definition for ‘tail’
print.VirtAccData: no visible global function definition for ‘tail’
print.stft: no visible global function definition for ‘tail’
pseudolines: no visible global function definition for ‘points’
pseudolines: no visible global function definition for ‘lines’
read.bin: no visible global function definition for ‘mmap’
read.bin: no visible global function definition for ‘char’
read.bin: no visible global function definition for ‘is.mmap’
read.bin: no visible global function definition for ‘munmap’
read.bin: no visible global function definition for ‘uint8’
read.bin: no visible global function definition for ‘txtProgressBar’
read.bin: no visible global function definition for ‘tail’
read.bin: no visible global function definition for ‘setTxtProgressBar’
read.bin: no visible global function definition for ‘object.size’
shift: no visible global function definition for ‘tail’
stftcalc: no visible global function definition for ‘txtProgressBar’
stftcalc: no visible global function definition for ‘setTxtProgressBar’
Undefined global functions or variables:
abline char col2rgb gray image is.mmap layout lines mmap munmap
object.size palette points rgb setTxtProgressBar tail txtProgressBar
uint8
Consider adding
importFrom("grDevices", "col2rgb", "gray", "palette", "rgb")
importFrom("graphics", "abline", "image", "layout", "lines", "points")
importFrom("utils", "object.size", "setTxtProgressBar", "tail",
"txtProgressBar")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64
Version: 1.1.1
Check: Rd line widths
Result: NOTE
Rd file 'AccData.Rd':
\usage lines wider than 90 characters:
plot(x, y=NULL, what = c("sd", "mean", "temperature", "light", "voltage"),draw = TRUE, resolution = 200,...)
Rd file 'get.intervals.Rd':
\usage lines wider than 90 characters:
get.intervals(x, start=0, end = 1, length = NULL, time.format = c("auto", "seconds", "days", "proportion", "measurements", "time"), inc ... [TRUNCATED]
\examples lines wider than 100 characters:
lines(get.intervals(procfile, start = 0.4, end = 0.5, time.format = "prop", incl.date = TRUE)[,1:2], col=2)
lines(get.intervals(procfile, start = 0.4, end = 5, time.format = "sec", incl.date = TRUE)[,1:2], col=3)
lines(get.intervals(procfile, start = "16:51", end = "16:52", time.format = "time", incl.date = TRUE)[,1:2], col=4)
#Note that measurements will depend on the downsampling rate, not the original sampling rate of the data
lines(get.intervals(procfile, start = 100, length = 10, time.format = "measurement", incl.date = TRUE)[,1:2], col=5)
points(get.intervals(virtfile, start = "16:52:10", "16:52:40", incl.date = TRUE)[,1:2], col=4, pch = ".")
lines(get.intervals(procfile, start = "16:49:00", "16:49:30", incl.date = TRUE, read.from.file = TRUE, downsample = 300)[,1:2], col=2) ... [TRUNCATED]
Rd file 'header.info.Rd':
\examples lines wider than 100 characters:
fileheader <- header.info(system.file("binfile/TESTfile.bin", package = "GENEAread")[1], more = TRUE)
Rd file 'plot.stft.Rd':
\usage lines wider than 90 characters:
plot(x, mode = c("decibels", "modulus", "pval"), log = "", showmax = TRUE, median = FALSE, xaxis = TRUE, topthresh, reassign = (!(is.nu ... [TRUNCATED]
Rd file 'read.bin.Rd':
\usage lines wider than 90 characters:
verbose = TRUE, do.temp = TRUE,do.volt = TRUE, calibrate = TRUE, downsample = NULL, blocksize , virtual = FALSE, mmap.load = (.Mach ... [TRUNCATED]
Rd file 'stft.Rd':
\examples lines wider than 100 characters:
stft(signal + sin( cumsum(seq(f2, f1, length = 5000))*2*pi), plot = TRUE, reassign = TRUE, win = 100)
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.1
Check: examples
Result: ERROR
Running examples in ‘GENEAread-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: AccData
> ### Title: Methods for processing and summarising AccData.
> ### Aliases: AccData [.AccData $.AccData print.AccData plot.AccData
> ### summary.AccData
> ### Keywords: methods
>
> ### ** Examples
>
>
> binfile = system.file("binfile/TESTfile.bin", package = "GENEAread")[1]
>
> #Read in the entire file, calibrated
> procfile<-read.bin(binfile)
Loading required package: mmap
Error in mmap(binfile, char()) :
unable to open file: possible permission issue.
Calls: read.bin -> header.info -> mmap
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64