CRAN Package Check Results for Package DClusterm

Last updated on 2018-05-28 06:46:33 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2 7.48 177.28 184.76 WARN
r-devel-linux-x86_64-debian-gcc 0.2 6.85 153.67 160.52 WARN
r-devel-linux-x86_64-fedora-clang 0.2 235.19 WARN
r-devel-linux-x86_64-fedora-gcc 0.2 238.45 WARN
r-devel-windows-ix86+x86_64 0.2 14.00 171.00 185.00 OK --no-vignettes
r-patched-linux-x86_64 0.2 6.62 171.73 178.35 WARN
r-patched-solaris-x86 0.2 928.50 WARN
r-release-linux-x86_64 0.2 6.75 170.68 177.43 WARN
r-release-windows-ix86+x86_64 0.2 17.00 112.00 129.00 OK --no-vignettes
r-release-osx-x86_64 0.2 NOTE
r-oldrel-windows-ix86+x86_64 0.2 16.00 121.00 137.00 OK --no-vignettes
r-oldrel-osx-x86_64 0.2 NOTE

Check Details

Version: 0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘INLA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘INLA’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: parallel
    Loading required package: sp
    Loading required package: spacetime
    Loading required package: DCluster
    Loading required package: boot
    Loading required package: spdep
    Loading required package: Matrix
    Loading required package: spData
    To access larger datasets in this package, install the
    spDataLarge package with: `install.packages('spDataLarge',
    repos='https://nowosad.github.io/drat/', type='source'))`
    Loading required package: MASS
    Loading required package: lattice
    
    Attaching package: 'lattice'
    
    The following object is masked from 'package:boot':
    
     melanoma
    
    Classes and Methods for R developed in the
    Political Science Computational Laboratory
    Department of Political Science
    Stanford University
    Simon Jackman
    hurdle and zeroinfl functions by Achim Zeileis
    make[1]: Entering directory '/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/DClusterm.Rcheck/vign_test/DClusterm/vignettes'
    pdflatex DClusterm
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    bibtex DClusterm
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    Classes and Methods for R developed in the
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    Department of Political Science
    Stanford University
    Simon Jackman
    hurdle and zeroinfl functions by Achim Zeileis
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    l.13 All<e9>vi
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Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2
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Version: 0.2
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Version: 0.2
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    Classes and Methods for R developed in the
    Political Science Computational Laboratory
    Department of Political Science
    Stanford University
    Simon Jackman
    hurdle and zeroinfl functions by Achim Zeileis
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    Classes and Methods for R developed in the
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    Simon Jackman
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    Classes and Methods for R developed in the
    Political Science Computational Laboratory
    Department of Political Science
    Stanford University
    Simon Jackman
    hurdle and zeroinfl functions by Achim Zeileis
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    *** Error code 1
    make: Fatal error: Command failed for target `DClusterm.pdf'
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    Error in buildVignettes(dir = "/home/ripley/R/packages/tests32/DClusterm.Rcheck/vign_test/DClusterm") :
     running 'make' failed
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Flavor: r-patched-solaris-x86

Version: 0.2
Check: re-building of vignette outputs
Result: WARN
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    Classes and Methods for R developed in the
    Political Science Computational Laboratory
    Department of Political Science
    Stanford University
    Simon Jackman
    hurdle and zeroinfl functions by Achim Zeileis
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