CRAN Package Check Results for Package wgsea

Last updated on 2018-05-28 06:47:07 CEST.

Check Details

Version: 1.8
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘snpStats’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.8
Check: R code for possible problems
Result: NOTE
    Z.value: no visible global function definition for ‘sd’
    Z.value: no visible global function definition for ‘pnorm’
    pairtest: no visible global function definition for ‘is’
    pairtest: no visible global function definition for ‘new’
    pairtest: no visible global function definition for ‘rbind2’
    pairtest: no visible global function definition for ‘p.value’
    pairtest: no visible global function definition for ‘single.snp.tests’
    scoretest: no visible global function definition for ‘pchisq’
    varplot : <anonymous>: no visible global function definition for ‘var’
    varplot: no visible global function definition for ‘plot’
    varplot: no visible global function definition for ‘abline’
    Undefined global functions or variables:
     abline is new p.value pchisq plot pnorm rbind2 sd single.snp.tests
     var
    Consider adding
     importFrom("graphics", "abline", "plot")
     importFrom("methods", "is", "new", "rbind2")
     importFrom("stats", "pchisq", "pnorm", "sd", "var")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Loading required package: Matrix
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running ‘texi2dvi’ on ‘wgsea.tex’ failed.
    LaTeX errors:
    ! Package inputenc Error: Invalid UTF-8 byte 252.
    
    See the inputenc package documentation for explanation.
    Type H <return> for immediate help.
     ...
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86

Version: 1.8
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: survival
    Loading required package: Matrix
    Warning in grepl("(Rerun to get|biblatex.*\\(re\\)run)", readLines(log, :
     input string 488 is invalid in this locale
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running ‘texi2dvi’ on ‘wgsea.tex’ failed.
    LaTeX errors:
    ! Package inputenc Error: Invalid UTF-8 byte 252.
    
    See the inputenc package documentation for explanation.
    Type H <return> for immediate help.
     ...
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-linux-x86_64