CRAN Package Check Results for Package Agreement

Last updated on 2018-06-17 19:49:28 CEST.

Check Details

Version: 0.8-1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.report summary.agreement summary.report summary.tir_iir
     summary.unified_agreement
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.8-1
Check: R code for possible problems
Result: NOTE
    IIR: no visible global function definition for ‘qnorm’
    TIR: no visible global function definition for ‘qnorm’
    agreement: no visible global function definition for ‘var’
    agreement: no visible global function definition for ‘pchisq’
    agreement: no visible global function definition for ‘dnorm’
    agreement: no visible global function definition for ‘qnorm’
    html.report: no visible global function definition for ‘plot’
    plot.report: no visible global function definition for ‘plot’
    plot.report: no visible global function definition for ‘axis’
    plot.report: no visible global function definition for ‘points’
    unified.agreement: no visible global function definition for ‘lm’
    unified.agreement: no visible global function definition for ‘qnorm’
    unified.agreement: no visible global function definition for ‘pnorm’
    Undefined global functions or variables:
     axis dnorm lm pchisq plot pnorm points qnorm var
    Consider adding
     importFrom("graphics", "axis", "plot", "points")
     importFrom("stats", "dnorm", "lm", "pchisq", "pnorm", "qnorm", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.8-1
Check: Rd line widths
Result: NOTE
    Rd file 'DCLHb.Rd':
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'TIR_IIR.Rd':
     \usage lines wider than 90 characters:
     TIR_IIR(dataset, var, k, m, TIR_test, TIR_ref, IIR_test, IIR_ref, error = "const", alpha = 0.05, TIR_a)
     \examples lines wider than 100 characters:
     TI <- TIR_IIR(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, TIR_test="1,2", TIR_ref="All", IIR_test="1", IIR ... [TRUNCATED]
    
    Rd file 'agreement.Rd':
     \usage lines wider than 90 characters:
     agreement(x, y, error, target, CCC_a = 0.95, TDI_a, alpha = 0.05, CP_a = 0.9, H_label = "x", V_label = "y", min = NA, max = NA, by = NA ... [TRUNCATED]
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'html.unified_agreement.Rd':
     \examples lines wider than 100 characters:
     ua <- unified.agreement(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, CCC_a_intra=0.9943, CCC_a_inter=0.9775 ... [TRUNCATED]
    
    Rd file 'plot.report.Rd':
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'summary.report.Rd':
     \examples lines wider than 100 characters:
     agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="co ... [TRUNCATED]
    
    Rd file 'summary.tir_iir.Rd':
     \examples lines wider than 100 characters:
     TI <- TIR_IIR(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, TIR_test="1,2", TIR_ref="All", IIR_test="1", IIR ... [TRUNCATED]
    
    Rd file 'summary.unified_agreement.Rd':
     \examples lines wider than 100 characters:
     ua <- unified.agreement(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, CCC_a_intra=0.9943, CCC_a_inter=0.9775 ... [TRUNCATED]
    
    Rd file 'unified.agreement.Rd':
     \usage lines wider than 90 characters:
     unified.agreement(dataset, var = NA, k, m, CCC_a = 0.9775, CCC_a_intra = 0.995, CCC_a_inter = 0.9775, CCC_a_total = 0.9775, CP_a = 0.9, ... [TRUNCATED]
     \examples lines wider than 100 characters:
     ua <- unified.agreement(dataset=DCLHb, var=c("HEMOCUE1","HEMOCUE2","SIGMA1","SIGMA2"), k=2, m=2, CCC_a_intra=0.9943, CCC_a_inter=0.9775 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.8-1
Check: examples
Result: ERROR
    Running examples in ‘Agreement-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: agreement
    > ### Title: Assessment of Agreement
    > ### Aliases: agreement
    >
    > ### ** Examples
    >
    > data(DCLHb);
    > HemocueAve <- apply(DCLHb[,c("HEMOCUE1","HEMOCUE2")],1,mean);
    > SigmaAve <- apply(DCLHb[,c("SIGMA1","SIGMA2")],1,mean);
    >
    > agr=agreement(y=HemocueAve,x=SigmaAve,V_label="Hemacue",H_label="Sigma",min=0,max=2000,by=250,CCC_a=0.9775,CP_a=0.9,TDI_a=150,error="const",target="random",dec=3,alpha=0.05);
    > summary(agr);
     Length Class Mode
    Data 11 -none- list
    Estimate 6 agreement list
    Conf_Limit 6 agreement list
    Allowance 6 agreement list
    > plot(agr);
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' is a list, but does not have components 'x' and 'y'
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64