CRAN Package Check Results for Package BIPOD

Last updated on 2018-06-17 19:49:30 CEST.

Check Details

Version: 0.2.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.BIPOD
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.2.1
Check: R code for possible problems
Result: NOTE
    plot.BIPOD: no visible global function definition for ‘par’
    plot.BIPOD: no visible global function definition for ‘matplot’
    plot.BIPOD: no visible global function definition for ‘abline’
    plot.BIPOD: no visible global function definition for ‘plot’
    plot.BIPOD: no visible global function definition for ‘density’
    plot.BIPOD: no visible global function definition for ‘curve’
    plot.BIPOD: no visible global function definition for ‘dlnorm’
    plot.BIPOD: no visible global function definition for ‘dnorm’
    plot.BIPOD: no visible global function definition for ‘acf’
    plot.BIPOD: no visible global function definition for ‘pairs’
    plot.BIPOD : standfun: no visible global function definition for ‘sd’
    plot.BIPOD: no visible global function definition for ‘sd’
    plot.BIPOD: no visible global function definition for ‘points’
    plot.BIPOD: no visible global function definition for ‘tail’
    plot.BIPOD: no visible global function definition for ‘matlines’
    plot.BIPOD: no visible binding for global variable ‘quantile’
    plot.BIPOD: no visible global function definition for ‘lines’
    Undefined global functions or variables:
     abline acf curve density dlnorm dnorm lines matlines matplot pairs
     par plot points quantile sd tail
    Consider adding
     importFrom("graphics", "abline", "curve", "lines", "matlines",
     "matplot", "pairs", "par", "plot", "points")
     importFrom("stats", "acf", "density", "dlnorm", "dnorm", "quantile",
     "sd")
     importFrom("utils", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.2.1
Check: compiled code
Result: NOTE
    File ‘BIPOD/libs/BIPOD.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.1
Check: examples
Result: ERROR
    Running examples in ‘BIPOD-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: Estfun
    > ### Title: Parameter estimation for some two dimensional diffusions.
    > ### Aliases: Estfun
    > ### Keywords: ~kwd1 ~kwd2
    >
    > ### ** Examples
    >
    > Data <- DiffSim(n=5000,
    + start=c(0,0),
    + Delta=.001,
    + driftpar=c(10,5,1.5,.6),
    + Sigma=diag(c(.5,.3)),
    + seed=1,
    + thin=100,
    + Model="FHN")
    >
    > A <- Estfun(data = Data[,1],
    + Delta = .001*100,
    + ImputeN = 5,
    + seed = 2,
    + GibbsN = 500,
    + parKnown = list("drift3"=1.5,"drift4"=.6,"diff2"=.3),
    + Start=c(10,10,10,10,1,1),
    + diffPriorMean= c(0,0),
    + diffPriorCovar= diag(2),
    + diffRW = diag(c(.01,.02)),
    + LatentPathStart = .5,
    + Model="FHN",
    + driftPriorMean = NULL,
    + driftPriorCovar = NULL,
    + driftRW = diag(4),
    + LatentMeanY0 = 0,
    + LatentVarY0 = 1,
    + RWrhoPaths = 0,
    + RWrho2PathPoints = 0)
    >
    > class(A);names(A)
    [1] "BIPOD"
    [1] "Drift" "Diff" "PathAcc" "PathAccPoints"
    [5] "LatentPath" "DiffAcc" "DriftAcc" "Info"
    > plot(A,type="trace",interval=1,theta=c(10,5,1.5,.6,.5,.3),subset=c(1,2,5))
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' is a list, but does not have components 'x' and 'y'
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.1
Check: installed package size
Result: NOTE
     installed size is 5.2Mb
     sub-directories of 1Mb or more:
     libs 5.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-osx-x86_64