CRAN Package Check Results for Package DivE

Last updated on 2018-06-17 19:49:37 CEST.

Check Details

Version: 1.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     DiveMaster.default divsamplenum.default divsubsamples.default
     fitsinglemod.default format.input plot.fitsingleMod
     print.DiversityMaster print.divsubsamples print.fitsingleMod
     print.scoresingleMod print.summary.DiversityMaster
     print.summary.divsubsamples print.summary.fitsingleMod
     print.summary.scoresingleMod scoresinglemod.default
     summary.DiversityMaster summary.divsubsamples summary.fitsingleMod
     summary.scoresingleMod
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    Curvature: no visible global function definition for ‘tail’
    gen.rarefac.div: no visible global function definition for ‘sd’
    plot.fitsingleMod: no visible global function definition for ‘points’
    plot.fitsingleMod: no visible global function definition for ‘lines’
    ref.area: no visible global function definition for ‘integrate’
    simm: no visible global function definition for ‘integrate’
    Undefined global functions or variables:
     integrate lines points sd tail
    Consider adding
     importFrom("graphics", "lines", "points")
     importFrom("stats", "integrate", "sd")
     importFrom("utils", "tail")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: examples
Result: ERROR
    Running examples in ‘DivE-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: DiveMaster
    > ### Title: DiveMaster
    > ### Aliases: DiveMaster DiveMaster.default print.DiversityMaster
    > ### summary.DiversityMaster print.summary.DiversityMaster
    > ### Keywords: diversity
    >
    > ### ** Examples
    >
    > require(DivE)
    > data(Bact1)
    > data(ModelSet)
    > data(ParamSeeds)
    > data(ParamRanges)
    >
    > testmodels <- list()
    > testmeta <- list()
    > paramranges <- list()
    >
    > # Choose a single model
    > testmodels <- c(testmodels, ModelSet[1])
    > #testmeta[[1]] <- (ParamSeeds[[1]]) # Commented out for sake of brevity)
    > testmeta[[1]] <- matrix(c(0.9451638, 0.007428265, 0.9938149, 1.0147441, 0.009543598, 0.9870419),
    + nrow=2, byrow=TRUE, dimnames=list(c(), c("a1", "a2", "a3"))) # Example seeds
    > paramranges[[1]] <- ParamRanges[[1]]
    >
    >
    > # Create divsubsamples object (NB: For quick illustration only -- not default parameters)
    > dss_1 <- divsubsamples(Bact1, nrf=2, minrarefac=1, maxrarefac=40, NResamples=5)
    Error in UseMethod("divsubsamples") :
     no applicable method for 'divsubsamples' applied to an object of class "data.frame"
    Calls: divsubsamples
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64