CRAN Package Check Results for Package FLIM

Last updated on 2018-06-17 19:49:40 CEST.

Check Details

Version: 1.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.flim plot.flimList plot.flimboot print.flim print.flimList
     print.flimboot summary.flim summary.flimList
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    FlimFormula: no visible global function definition for ‘is’
    FlimFormula: no visible global function definition for ‘terms’
    FlimFormula: no visible global function definition for ‘reformulate’
    ImputateMissingValues : RegFun: no visible global function definition
     for ‘lm’
    ImputateMissingValues : RegFun: no visible binding for global variable
     ‘na.omit’
    ImputateMissingValues: no visible global function definition for
     ‘predict’
    ImputateMissingValues: no visible global function definition for
     ‘model.matrix’
    ImputateMissingValues: no visible global function definition for ‘coef’
    flimList: no visible global function definition for ‘coef’
    flimSD: no visible binding for global variable ‘sd’
    plot.flim: no visible global function definition for ‘plot’
    plot.flim: no visible global function definition for ‘lines’
    plot.flim: no visible global function definition for ‘points’
    plot.flimList: no visible global function definition for ‘par’
    plot.flimList: no visible global function definition for ‘plot’
    plot.flimboot: no visible global function definition for ‘plot’
    plot.flimboot: no visible global function definition for ‘points’
    plot.flimboot: no visible global function definition for ‘lines’
    spaplot: no visible global function definition for ‘plot’
    spaplot: no visible global function definition for ‘lines’
    Undefined global functions or variables:
     coef is lines lm model.matrix na.omit par plot points predict
     reformulate sd terms
    Consider adding
     importFrom("graphics", "lines", "par", "plot", "points")
     importFrom("methods", "is")
     importFrom("stats", "coef", "lm", "model.matrix", "na.omit", "predict",
     "reformulate", "sd", "terms")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2
Check: examples
Result: ERROR
    Running examples in ‘FLIM-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: flim
    > ### Title: Farewell's Linear Increments Model
    > ### Aliases: flim print.flim summary.flim
    >
    > ### ** Examples
    >
    > library(FLIM)
    > data(panss)
    > panss.flim <- flim(Y~Y+factor(treat), panss, "id", "time",
    + t.values=c(0,1,2,4,6,8))
    > plot(panss.flim, "Y", "treat")
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' and 'y' lengths differ
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64