CRAN Package Check Results for Package Modalclust

Last updated on 2018-06-17 19:49:49 CEST.

Check Details

Version: 0.6
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘MASS’ ‘parallel’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.6
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     contour.hmac plot.hmac summary.hmac
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.6
Check: R code for possible problems
Result: NOTE
    choose.cluster: no visible global function definition for ‘plot’
    choose.cluster: no visible global function definition for ‘points’
    choose.cluster: no visible global function definition for ‘title’
    choose.cluster: no visible global function definition for ‘locator’
    contour.hmac: no visible global function definition for ‘smoothScatter’
    contour.hmac: no visible global function definition for ‘plot’
    contour.hmac: no visible global function definition for ‘points’
    contour.hmac: no visible global function definition for ‘kde2d’
    contour.hmac: no visible global function definition for ‘contour’
    contour.hmac: no visible global function definition for ‘title’
    hard.hmac: no visible global function definition for ‘par’
    hard.hmac: no visible global function definition for ‘density’
    hard.hmac: no visible binding for global variable ‘sd’
    hard.hmac: no visible global function definition for ‘points’
    hard.hmac: no visible global function definition for ‘title’
    hmac: no visible binding for global variable ‘sd’
    modalclust: no visible binding for global variable ‘sd’
    modalclust: no visible global function definition for ‘mclapply’
    mydmvnorm: no visible global function definition for ‘mahalanobis’
    phmac: no visible binding for global variable ‘sd’
    phmac: no visible global function definition for ‘mclapply’
    plot.hmac: no visible global function definition for ‘plot’
    plot.hmac: no visible global function definition for ‘axis’
    plot.hmac: no visible global function definition for ‘points’
    plot.hmac: no visible global function definition for ‘mtext’
    plot.hmac: no visible global function definition for ‘rainbow’
    plot.hmac: no visible global function definition for ‘title’
    plot.hmac: no visible global function definition for ‘lines’
    soft.hmac: no visible global function definition for ‘par’
    soft.hmac: no visible binding for global variable ‘sd’
    soft.hmac: no visible global function definition for ‘rgb’
    soft.hmac: no visible global function definition for ‘points’
    soft.hmac: no visible global function definition for ‘legend’
    soft.hmac: no visible global function definition for ‘title’
    Undefined global functions or variables:
     axis contour density kde2d legend lines locator mahalanobis mclapply
     mtext par plot points rainbow rgb sd smoothScatter title
    Consider adding
     importFrom("grDevices", "rainbow", "rgb")
     importFrom("graphics", "axis", "contour", "legend", "lines", "locator",
     "mtext", "par", "plot", "points", "smoothScatter", "title")
     importFrom("stats", "density", "mahalanobis", "sd")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.6
Check: examples
Result: ERROR
    Running examples in ‘Modalclust-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: contour.hmac
    > ### Title: Plot clusters with different colors for two dimensional data
    > ### overlayed on the contours of the original data.
    > ### Aliases: contour.hmac contour
    > ### Keywords: cluster, hierarchical, nested, modal
    >
    > ### ** Examples
    >
    > data(disc2d.hmac)
    > # disc2d.hmac is the output of phmac(disc2d,npart=1)
    >
    > contour.hmac(disc2d.hmac,level=3,col=gray(0.7))
    Loading required package: MASS
    >
    > # Provide contour line at probability density 0.05.
    > contour(disc2d.hmac,n.cluster=2,prob=0.05)
    Error in contour.default(disc2d.hmac, n.cluster = 2, prob = 0.05) :
     no proper 'z' matrix specified
    Calls: contour -> contour.default
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: mvtnorm
    Loading required package: zoo
    
    Attaching package: ‘zoo’
    
    The following objects are masked from ‘package:base’:
    
     as.Date, as.Date.numeric
    
    Loading required package: class
    Loading required package: parallel
    
    Error: processing vignette ‘Modalclust.Rnw’ failed with diagnostics:
     chunk 6
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' is a list, but does not have components 'x' and 'y'
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64