CRAN Package Check Results for Package clogitL1

Last updated on 2018-06-17 19:49:33 CEST.

Check Details

Version: 1.4
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.4
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.clogitL1 plot.cv.clogitL1 print.clogitL1 summary.clogitL1
     summary.cv.clogitL1
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.4
Check: R code for possible problems
Result: NOTE
    cv.clogitL1 : <anonymous>: no visible global function definition for
     ‘var’
    plot.clogitL1: no visible global function definition for ‘matplot’
    plot.clogitL1: no visible global function definition for ‘legend’
    plot.clogitL1: no visible global function definition for ‘text’
    plot.cv.clogitL1: no visible global function definition for ‘matplot’
    plot.cv.clogitL1: no visible global function definition for ‘matlines’
    plot.cv.clogitL1: no visible global function definition for ‘points’
    plot.cv.clogitL1: no visible global function definition for ‘axis’
    plot.cv.clogitL1: no visible global function definition for ‘abline’
    Undefined global functions or variables:
     abline axis legend matlines matplot points text var
    Consider adding
     importFrom("graphics", "abline", "axis", "legend", "matlines",
     "matplot", "points", "text")
     importFrom("stats", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.4
Check: compiled code
Result: NOTE
    File ‘clogitL1/libs/clogitL1.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.4
Check: examples
Result: ERROR
    Running examples in ‘clogitL1-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: clogitL1
    > ### Title: Conditional logistic regression with elastic net penalties
    > ### Aliases: clogitL1
    >
    > ### ** Examples
    >
    >
    > set.seed(145)
    > # data parameters
    > K = 10 # number of strata
    > n = 5 # number in strata
    > m = 2 # cases per stratum
    > p = 20 # predictors
    >
    > # generate data
    > y = rep(c(rep(1, m), rep(0, n-m)), K)
    > X = matrix (rnorm(K*n*p, 0, 1), ncol = p) # pure noise
    > strata = sort(rep(1:K, n))
    >
    > par(mfrow = c(1,2))
    > # fit the conditional logistic model
    > clObj = clogitL1(y=y, x=X, strata)
    > plot(clObj, logX=TRUE)
    Error in xy.coords(x, y, xlabel, ylabel, log) :
     'x' is a list, but does not have components 'x' and 'y'
    Calls: plot -> plot.default -> xy.coords
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64