CRAN Package Check Results for Package elrm

Last updated on 2018-06-17 19:49:38 CEST.

Check Details

Version: 1.2.2
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.elrm summary.elrm update.elrm
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.2.2
Check: R code for possible problems
Result: NOTE
    elrm: no visible global function definition for ‘write.table’
    plot.elrm: no visible global function definition for ‘dev.new’
    progress: no visible global function definition for ‘flush.console’
    update.elrm: no visible global function definition for ‘write.table’
    Undefined global functions or variables:
     dev.new flush.console write.table
    Consider adding
     importFrom("grDevices", "dev.new")
     importFrom("utils", "flush.console", "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.2.2
Check: compiled code
Result: NOTE
    File ‘elrm/libs/elrm.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Objects: ‘binomMCMC.o’, ‘functions.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘binomMCMC.o’
    File ‘elrm/libs/elrm.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.2.2
Check: examples
Result: ERROR
    Running examples in ‘elrm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: plot.elrm
    > ### Title: Plot Diagnostics for an elrm Object
    > ### Aliases: plot.elrm
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > # Drug dataset example with sex and treatment as the variables of interest
    > data(drugDat);
    > drug.elrm = elrm(formula=recovered/n~sex+treatment, interest=~sex+treatment, r=4,
    + iter=50000, burnIn=1000, dataset=drugDat);
    Generating the Markov chain ...
    <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 0% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 5% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 10% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 15% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 20% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 25% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 30% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 35% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 40% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 45% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 50% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 55% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 60% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 65% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 70% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 75% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 80% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 85% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 90% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 95% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 100%
    Generation of the Markov Chain required 6 secs
    Conducting inference ...
    Inference required 2 secs
    >
    > # Plot the sampled values of the sufficient statistic for each parameter of
    > # interest (sex and treatment)
    > plot(drug.elrm,p=0.5,ask=TRUE);
    Error in plot.default(drug.elrm, p = 0.5, ask = TRUE) :
     argument 2 matches multiple formal arguments
    Calls: plot
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64

Version: 1.2.2
Check: examples
Result: ERROR
    Running examples in ‘elrm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: plot.elrm
    > ### Title: Plot Diagnostics for an elrm Object
    > ### Aliases: plot.elrm
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > # Drug dataset example with sex and treatment as the variables of interest
    > data(drugDat);
    > drug.elrm = elrm(formula=recovered/n~sex+treatment, interest=~sex+treatment, r=4,
    + iter=50000, burnIn=1000, dataset=drugDat);
    Generating the Markov chain ...
    <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 0% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 5% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 10% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 15% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 20% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 25% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 30% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 35% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 40% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 45% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 50% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 55% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 60% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 65% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 70% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 75% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 80% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 85% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 90% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 95% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 100%
    Generation of the Markov Chain required 4 secs
    Conducting inference ...
    Inference required 2 secs
    >
    > # Plot the sampled values of the sufficient statistic for each parameter of
    > # interest (sex and treatment)
    > plot(drug.elrm,p=0.5,ask=TRUE);
    Error in plot.default(drug.elrm, p = 0.5, ask = TRUE) :
     argument 2 matches multiple formal arguments
    Calls: plot
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.2
Check: compiled code
Result: NOTE
    File 'elrm/libs/i386/elrm.dll':
     Found 'rand', possibly from 'rand' (C)
     Objects: 'binomMCMC.o', 'functions.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'binomMCMC.o'
    File 'elrm/libs/x64/elrm.dll':
     Found 'rand', possibly from 'rand' (C)
     Objects: 'binomMCMC.o', 'functions.o'
     Found 'srand', possibly from 'srand' (C)
     Object: 'binomMCMC.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.2
Check: examples
Result: ERROR
    Running examples in ‘elrm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: plot.elrm
    > ### Title: Plot Diagnostics for an elrm Object
    > ### Aliases: plot.elrm
    > ### Keywords: methods
    >
    > ### ** Examples
    >
    > # Drug dataset example with sex and treatment as the variables of interest
    > data(drugDat);
    > drug.elrm = elrm(formula=recovered/n~sex+treatment, interest=~sex+treatment, r=4,
    + iter=50000, burnIn=1000, dataset=drugDat);
    Generating the Markov chain ...
    <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 0% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 5% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 10% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 15% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 20% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 25% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 30% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 35% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 40% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 45% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 50% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 55% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 60% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 65% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 70% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 75% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 80% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 85% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 90% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 95% <08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08><08>Progress: 100%
    Generation of the Markov Chain required 6 secs
    Conducting inference ...
    Inference required 3 secs
    >
    > # Plot the sampled values of the sufficient statistic for each parameter of
    > # interest (sex and treatment)
    > plot(drug.elrm,p=0.5,ask=TRUE);
    Error in plot.default(drug.elrm, p = 0.5, ask = TRUE) :
     argument 2 matches multiple formal arguments
    Calls: plot
    Execution halted
Flavor: r-patched-linux-x86_64

Version: 1.2.2
Check: compiled code
Result: NOTE
    File ‘elrm/libs/elrm.so’:
     Found ‘rand’, possibly from ‘rand’ (C)
     Objects: ‘binomMCMC.o’, ‘functions.o’
     Found ‘srand’, possibly from ‘srand’ (C)
     Object: ‘binomMCMC.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-solaris-x86

Version: 1.2.2
Check: compiled code
Result: NOTE
    File ‘elrm/libs/elrm.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Objects: ‘binomMCMC.o’, ‘functions.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘binomMCMC.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor use Fortran I/O
    nor system RNGs.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64

Version: 1.2.2
Check: compiled code
Result: NOTE
    File ‘elrm/libs/elrm.so’:
     Found ‘_rand’, possibly from ‘rand’ (C)
     Objects: ‘binomMCMC.o’, ‘functions.o’
     Found ‘_srand’, possibly from ‘srand’ (C)
     Object: ‘binomMCMC.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-oldrel-osx-x86_64